Literature DB >> 24699738

Crystallization and preliminary X-ray diffraction analysis of domain-chimeric L-(2S,3S)-butanediol dehydrogenase.

Tomohito Shimegi1, Takuji Ooyama1, Takashi Ohtsuki1, Genji Kurisu2, Masami Kusunoki1, Sadaharu Ui1.   

Abstract

A domain-chimeric L-2,3-butanediol dehydrogenase (chimera L-BDH), which was designed to possess both the S-configuration specificity of L-BDH and the stability of meso-BDH, was constructed by exchanging the respective domains of these two BDHs. However, chimera L-BDH possessed a lower enzymatic function than expected based on the two original enzymes. To elucidate the causes of the decreased stability and substrate specificity, crystallization of the protein was performed. Chimera L-BDH was purified to homogeneity via ammonium sulfate fractionation and three column-chromatography steps, and was crystallized using the hanging-drop vapour-diffusion method. The crystals belonged to space group C2221, diffracted synchrotron radiation to 1.58 Å resolution and were most likely to contain two molecules in the asymmetric unit.

Entities:  

Keywords:  domain chimera; l-2,3-butanediol dehydrogenase

Mesh:

Substances:

Year:  2014        PMID: 24699738      PMCID: PMC3976062          DOI: 10.1107/S2053230X13032755

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  10 in total

1.  Can anomalous signal of sulfur become a tool for solving protein crystal structures?

Authors:  Z Dauter; M Dauter; E de La Fortelle; G Bricogne; G M Sheldrick
Journal:  J Mol Biol       Date:  1999-05-28       Impact factor: 5.469

2.  The crystal structure of the actIII actinorhodin polyketide reductase: proposed mechanism for ACP and polyketide binding.

Authors:  Andrea T Hadfield; Claire Limpkin; Watchrra Teartasin; Thomas J Simpson; John Crosby; Matthew P Crump
Journal:  Structure       Date:  2004-10       Impact factor: 5.006

3.  Construction of a tailor-made L (2S,3S)-butanediol dehydrogenase by exchanging domains between native structural analogs.

Authors:  Tomohito Shimegi; Yuhsuke Takusagawa; Takashi Ohtsuki; Satoko Noda; Genji Kurisu; Masami Kusunoki; Sadaharu Ui
Journal:  Protein Pept Lett       Date:  2011-08       Impact factor: 1.890

4.  A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.

Authors:  M M Bradford
Journal:  Anal Biochem       Date:  1976-05-07       Impact factor: 3.365

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Purification and characterization of L-2,3-butanediol dehydrogenase of Brevibacterium saccharolyticum C-1012 expressed in Escherichia coli.

Authors:  Y Takusagawa; M Otagiri; S Ui; T Ohtsuki; A Mimura; M Ohkuma; T Kudo
Journal:  Biosci Biotechnol Biochem       Date:  2001-08       Impact factor: 2.043

7.  Structural insights into unique substrate selectivity of Thermoplasma acidophilum D-aldohexose dehydrogenase.

Authors:  Yoshiaki Yasutake; Yoshiaki Nishiya; Noriko Tamura; Tomohiro Tamura
Journal:  J Mol Biol       Date:  2007-01-16       Impact factor: 5.469

8.  Crystal structure of meso-2,3-butanediol dehydrogenase in a complex with NAD+ and inhibitor mercaptoethanol at 1.7 A resolution for understanding of chiral substrate recognition mechanisms.

Authors:  M Otagiri; G Kurisu; S Ui; Y Takusagawa; M Ohkuma; T Kudo; M Kusunoki
Journal:  J Biochem       Date:  2001-02       Impact factor: 3.387

9.  Structural basis for chiral substrate recognition by two 2,3-butanediol dehydrogenases.

Authors:  Masato Otagiri; Sadaharu Ui; Yuhsuke Takusagawa; Takashi Ohtsuki; Genji Kurisu; Masami Kusunoki
Journal:  FEBS Lett       Date:  2010-01-04       Impact factor: 4.124

10.  Production of L-2,3-butanediol by a new pathway constructed in Escherichia coli.

Authors:  S Ui; Y Takusagawa; T Sato; T Ohtsuki; A Mimura; M Ohkuma; T Kudo
Journal:  Lett Appl Microbiol       Date:  2004       Impact factor: 2.858

  10 in total

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