Literature DB >> 24699078

New insights into ubiquitin E3 ligase mechanism.

Christopher E Berndsen1, Cynthia Wolberger2.   

Abstract

E3 ligases carry out the final step in the ubiquitination cascade, catalyzing transfer of ubiquitin from an E2 enzyme to form a covalent bond with a substrate lysine. Three distinct classes of E3 ligases have been identified that stimulate transfer of ubiquitin and ubiquitin-like proteins through either a direct or an indirect mechanism. Only recently have the catalytic mechanisms of E3 ligases begun to be elucidated.

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Year:  2014        PMID: 24699078     DOI: 10.1038/nsmb.2780

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  85 in total

1.  Structure of an E6AP-UbcH7 complex: insights into ubiquitination by the E2-E3 enzyme cascade.

Authors:  L Huang; E Kinnucan; G Wang; S Beaudenon; P M Howley; J M Huibregtse; N P Pavletich
Journal:  Science       Date:  1999-11-12       Impact factor: 47.728

2.  Ariadne-1: a vital Drosophila gene is required in development and defines a new conserved family of ring-finger proteins.

Authors:  M Aguilera; M Oliveros; M Martínez-Padrón; J A Barbas; A Ferrús
Journal:  Genetics       Date:  2000-07       Impact factor: 4.562

3.  Autoregulation of Parkin activity through its ubiquitin-like domain.

Authors:  Viduth K Chaugule; Lynn Burchell; Kathryn R Barber; Ateesh Sidhu; Simon J Leslie; Gary S Shaw; Helen Walden
Journal:  EMBO J       Date:  2011-06-21       Impact factor: 11.598

4.  Conformational flexibility underlies ubiquitin ligation mediated by the WWP1 HECT domain E3 ligase.

Authors:  Mark A Verdecia; Claudio A P Joazeiro; Nicholas J Wells; Jean-Luc Ferrer; Marianne E Bowman; Tony Hunter; Joseph P Noel
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

5.  A structurally unique E2-binding domain activates ubiquitination by the ERAD E2, Ubc7p, through multiple mechanisms.

Authors:  Meredith B Metzger; Yu-He Liang; Ranabir Das; Jennifer Mariano; Shengjian Li; Jess Li; Zlatka Kostova; R Andrew Byrd; Xinhua Ji; Allan M Weissman
Journal:  Mol Cell       Date:  2013-05-09       Impact factor: 17.970

6.  Structure of a ubiquitin-loaded HECT ligase reveals the molecular basis for catalytic priming.

Authors:  Elena Maspero; Eleonora Valentini; Sara Mari; Valentina Cecatiello; Paolo Soffientini; Sebastiano Pasqualato; Simona Polo
Journal:  Nat Struct Mol Biol       Date:  2013-05-05       Impact factor: 15.369

7.  The structure and conformation of Lys63-linked tetraubiquitin.

Authors:  Ajit B Datta; Greg L Hura; Cynthia Wolberger
Journal:  J Mol Biol       Date:  2009-08-04       Impact factor: 5.469

8.  Ube2W conjugates ubiquitin to α-amino groups of protein N-termini.

Authors:  Michael H Tatham; Anna Plechanovová; Ellis G Jaffray; Helena Salmen; Ronald T Hay
Journal:  Biochem J       Date:  2013-07-01       Impact factor: 3.857

9.  Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP.

Authors:  Benjamin Stieglitz; Rohini R Rana; Marios G Koliopoulos; Aylin C Morris-Davies; Veronique Schaeffer; Evangelos Christodoulou; Steven Howell; Nicholas R Brown; Ivan Dikic; Katrin Rittinger
Journal:  Nature       Date:  2013-10-20       Impact factor: 49.962

10.  Structure of HHARI, a RING-IBR-RING ubiquitin ligase: autoinhibition of an Ariadne-family E3 and insights into ligation mechanism.

Authors:  David M Duda; Jennifer L Olszewski; Jonathan P Schuermann; Igor Kurinov; Darcie J Miller; Amanda Nourse; Arno F Alpi; Brenda A Schulman
Journal:  Structure       Date:  2013-05-23       Impact factor: 5.006

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  245 in total

1.  UBE2O remodels the proteome during terminal erythroid differentiation.

Authors:  Anthony T Nguyen; Miguel A Prado; Paul J Schmidt; Anoop K Sendamarai; Joshua T Wilson-Grady; Mingwei Min; Dean R Campagna; Geng Tian; Yuan Shi; Verena Dederer; Mona Kawan; Nathalie Kuehnle; Joao A Paulo; Yu Yao; Mitchell J Weiss; Monica J Justice; Steven P Gygi; Mark D Fleming; Daniel Finley
Journal:  Science       Date:  2017-08-04       Impact factor: 47.728

Review 2.  SCF ubiquitin ligase-targeted therapies.

Authors:  Jeffrey R Skaar; Julia K Pagan; Michele Pagano
Journal:  Nat Rev Drug Discov       Date:  2014-11-14       Impact factor: 84.694

Review 3.  Using protein motion to read, write, and erase ubiquitin signals.

Authors:  Aaron H Phillips; Jacob E Corn
Journal:  J Biol Chem       Date:  2015-09-09       Impact factor: 5.157

4.  Targeting the ubiquitin-conjugating enzyme E2D4 for cancer drug discovery-a structure-based approach.

Authors:  Vishwanath Ramatenki; Ramakrishna Dumpati; Rajender Vadija; Santhiprada Vellanki; Sarita Rajender Potlapally; Rohini Rondla; Uma Vuruputuri
Journal:  J Chem Biol       Date:  2016-12-24

5.  Functional diversification of the NleG effector family in enterohemorrhagic Escherichia coli.

Authors:  Dylan Valleau; Dustin J Little; Dominika Borek; Tatiana Skarina; Andrew T Quaile; Rosa Di Leo; Scott Houliston; Alexander Lemak; Cheryl H Arrowsmith; Brian K Coombes; Alexei Savchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-14       Impact factor: 11.205

Review 6.  Post-translational modification and protein sorting to small extracellular vesicles including exosomes by ubiquitin and UBLs.

Authors:  Hiroshi Ageta; Kunihiro Tsuchida
Journal:  Cell Mol Life Sci       Date:  2019-07-30       Impact factor: 9.261

7.  BMI1-RING1B is an autoinhibited RING E3 ubiquitin ligase.

Authors:  Asad M Taherbhoy; Oscar W Huang; Andrea G Cochran
Journal:  Nat Commun       Date:  2015-07-07       Impact factor: 14.919

8.  Quantitative Middle-Down MS Analysis of Parkin-Mediated Ubiquitin Chain Assembly.

Authors:  Kirandeep K Deol; Stephen J Eyles; Eric R Strieter
Journal:  J Am Soc Mass Spectrom       Date:  2020-04-28       Impact factor: 3.109

9.  Crystal structure of a human ubiquitin E1-ubiquitin complex reveals conserved functional elements essential for activity.

Authors:  Zongyang Lv; Katelyn M Williams; Lingmin Yuan; James H Atkison; Shaun K Olsen
Journal:  J Biol Chem       Date:  2018-10-02       Impact factor: 5.157

10.  Proteome-wide Analysis Reveals Substrates of E3 Ligase RNF146 Targeted for Degradation.

Authors:  Litong Nie; Chao Wang; Nan Li; Xu Feng; Namsoo Lee; Dan Su; Mengfan Tang; Fan Yao; Junjie Chen
Journal:  Mol Cell Proteomics       Date:  2020-09-21       Impact factor: 5.911

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