Literature DB >> 24697429

Gaussian approximations for stochastic systems with delay: chemical Langevin equation and application to a Brusselator system.

Tobias Brett1, Tobias Galla1.   

Abstract

We present a heuristic derivation of Gaussian approximations for stochastic chemical reaction systems with distributed delay. In particular, we derive the corresponding chemical Langevin equation. Due to the non-Markovian character of the underlying dynamics, these equations are integro-differential equations, and the noise in the Gaussian approximation is coloured. Following on from the chemical Langevin equation, a further reduction leads to the linear-noise approximation. We apply the formalism to a delay variant of the celebrated Brusselator model, and show how it can be used to characterise noise-driven quasi-cycles, as well as noise-triggered spiking. We find surprisingly intricate dependence of the typical frequency of quasi-cycles on the delay period.

Entities:  

Year:  2014        PMID: 24697429     DOI: 10.1063/1.4867786

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Intrinsic noise, Delta-Notch signalling and delayed reactions promote sustained, coherent, synchronized oscillations in the presomitic mesoderm.

Authors:  Joseph W Baron; Tobias Galla
Journal:  J R Soc Interface       Date:  2019-11-27       Impact factor: 4.118

2.  Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation.

Authors:  Nick E Phillips; Cerys S Manning; Tom Pettini; Veronica Biga; Elli Marinopoulou; Peter Stanley; James Boyd; James Bagnall; Pawel Paszek; David G Spiller; Michael Rh White; Marc Goodfellow; Tobias Galla; Magnus Rattray; Nancy Papalopulu
Journal:  Elife       Date:  2016-10-04       Impact factor: 8.140

3.  Quantitative single-cell live imaging links HES5 dynamics with cell-state and fate in murine neurogenesis.

Authors:  Cerys S Manning; Veronica Biga; James Boyd; Jochen Kursawe; Bodvar Ymisson; David G Spiller; Christopher M Sanderson; Tobias Galla; Magnus Rattray; Nancy Papalopulu
Journal:  Nat Commun       Date:  2019-06-27       Impact factor: 14.919

4.  Effects of noise and time delay on E2F's expression level in a bistable Rb-E2F gene's regulatory network.

Authors:  John Billy Kirunda; Lijian Yang; Lulu Lu; Ya Jia
Journal:  IET Syst Biol       Date:  2021-04-21       Impact factor: 1.615

  4 in total

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