Literature DB >> 24685908

Drugs for plant chromosome and chromatin research.

Ales Pecinka1, Chun-Hsin Liu.   

Abstract

Eukaryotic genomes are organized into chromosomes. Genetic information regularly becomes damaged and requires repair in order to ensure genome stability. Furthermore, expression of individual genetic elements on the chromosome(s) is controlled by several factors, including chromatin. Understanding the functions of chromatin may provide efficient tools for regulating gene expression. There has been great progress in understanding genome control using genetic mutations, but the use of mutants is sometimes not possible or may require additional interference with DNA or chromatin structure using specific treatments in order to obtain phenotypes. Therefore, chemical genetics has become an integral part of plant genome research. Here, we summarize information on the most commonly used drugs for chromatin and DNA damage repair studies, with the aim of simplifying the choice of drug and the estimation of possible side effects for current and future research.
© 2014 S. Karger AG, Basel.

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Year:  2014        PMID: 24685908     DOI: 10.1159/000360774

Source DB:  PubMed          Journal:  Cytogenet Genome Res        ISSN: 1424-8581            Impact factor:   1.636


  10 in total

1.  Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in Arabidopsis thaliana.

Authors:  Yue Zhou; Emmanuel Tergemina; Haitao Cui; Alexander Förderer; Benjamin Hartwig; Geo Velikkakam James; Korbinian Schneeberger; Franziska Turck
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-20       Impact factor: 11.205

2.  Repair of DNA Damage Induced by the Cytidine Analog Zebularine Requires ATR and ATM in Arabidopsis.

Authors:  Chun-Hsin Liu; Andreas Finke; Mariana Díaz; Wilfried Rozhon; Brigitte Poppenberger; Tuncay Baubec; Ales Pecinka
Journal:  Plant Cell       Date:  2015-05-28       Impact factor: 11.277

3.  Zebularine induces enzymatic DNA-protein crosslinks in 45S rDNA heterochromatin of Arabidopsis nuclei.

Authors:  Klara Prochazkova; Andreas Finke; Eva Dvořák Tomaštíková; Jaroslav Filo; Heinrich Bente; Petr Dvořák; Miroslav Ovečka; Jozef Šamaj; Ales Pecinka
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

4.  5-azacytidine promotes microspore embryogenesis initiation by decreasing global DNA methylation, but prevents subsequent embryo development in rapeseed and barley.

Authors:  María-Teresa Solís; Ahmed-Abdalla El-Tantawy; Vanesa Cano; María C Risueño; Pilar S Testillano
Journal:  Front Plant Sci       Date:  2015-06-25       Impact factor: 5.753

5.  Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements.

Authors:  Björn Pietzenuk; Catarine Markus; Hervé Gaubert; Navratan Bagwan; Aldo Merotto; Etienne Bucher; Ales Pecinka
Journal:  Genome Biol       Date:  2016-10-11       Impact factor: 13.583

Review 6.  Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex.

Authors:  Mariana Diaz; Ales Pecinka
Journal:  Genes (Basel)       Date:  2018-01-12       Impact factor: 4.096

7.  Bypassing reproductive barriers in hybrid seeds using chemically induced epimutagenesis.

Authors:  Jonathan Huc; Katarzyna Dziasek; Kannan Pachamuthu; Tristan Woh; Claudia Köhler; Filipe Borges
Journal:  Plant Cell       Date:  2022-03-04       Impact factor: 11.277

8.  Zebularine, a DNA Methylation Inhibitor, Activates Anthocyanin Accumulation in Grapevine Cells.

Authors:  Junhua Kong; Virginie Garcia; Enric Zehraoui; Linda Stammitti; Ghislaine Hilbert; Christel Renaud; Stéphane Maury; Alain Delaunay; Stéphanie Cluzet; Fatma Lecourieux; David Lecourieux; Emeline Teyssier; Philippe Gallusci
Journal:  Genes (Basel)       Date:  2022-07-15       Impact factor: 4.141

9.  A Comparative Analysis of 5-Azacytidine- and Zebularine-Induced DNA Demethylation.

Authors:  Patrick T Griffin; Chad E Niederhuth; Robert J Schmitz
Journal:  G3 (Bethesda)       Date:  2016-09-08       Impact factor: 3.542

10.  Experimental DNA Demethylation Associates with Changes in Growth and Gene Expression of Oak Tree Seedlings.

Authors:  Luke Browne; Alayna Mead; Courtney Horn; Kevin Chang; Zeynep A Celikkol; Claudia L Henriquez; Feiyang Ma; Eric Beraut; Rachel S Meyer; Victoria L Sork
Journal:  G3 (Bethesda)       Date:  2020-03-05       Impact factor: 3.154

  10 in total

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