Literature DB >> 24683989

Cohort-level brain mapping: learning cognitive atoms to single out specialized regions.

Gaël Varoquaux, Yannick Schwartz, Philippe Pinel, Bertrand Thirion.   

Abstract

Functional Magnetic Resonance Imaging (fMRI) studies map the human brain by testing the response of groups of individuals to carefully-crafted and contrasted tasks in order to delineate specialized brain regions and networks. The number of functional networks extracted is limited by the number of subject-level contrasts and does not grow with the cohort. Here, we introduce a new group-level brain mapping strategy to differentiate many regions reflecting the variety of brain network configurations observed in the population. Based on the principle of functional segregation, our approach singles out functionally-specialized brain regions by learning group-level functional profiles on which the response of brain regions can be represented sparsely. We use a dictionary-learning formulation that can be solved efficiently with on-line algorithms, scaling to arbitrary large datasets. Importantly, we model inter-subject correspondence as structure imposed in the estimated functional profiles, integrating a structure-inducing regularization with no additional computational cost. On a large multi-subject study, our approach extracts a large number of brain networks with meaningful functional profiles.

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Year:  2013        PMID: 24683989     DOI: 10.1007/978-3-642-38868-2_37

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  7 in total

1.  Large-scale sparse functional networks from resting state fMRI.

Authors:  Hongming Li; Theodore D Satterthwaite; Yong Fan
Journal:  Neuroimage       Date:  2017-05-05       Impact factor: 6.556

2.  Functional Specialization and Flexibility in Human Association Cortex.

Authors:  B T Thomas Yeo; Fenna M Krienen; Simon B Eickhoff; Siti N Yaakub; Peter T Fox; Randy L Buckner; Christopher L Asplund; Michael W L Chee
Journal:  Cereb Cortex       Date:  2014-09-23       Impact factor: 5.357

Review 3.  How machine learning is shaping cognitive neuroimaging.

Authors:  Gael Varoquaux; Bertrand Thirion
Journal:  Gigascience       Date:  2014-11-17       Impact factor: 6.524

4.  Individual Brain Charting dataset extension, second release of high-resolution fMRI data for cognitive mapping.

Authors:  Ana Luísa Pinho; Alexis Amadon; Baptiste Gauthier; Nicolas Clairis; André Knops; Sarah Genon; Elvis Dohmatob; Juan Jesús Torre; Chantal Ginisty; Séverine Becuwe-Desmidt; Séverine Roger; Yann Lecomte; Valérie Berland; Laurence Laurier; Véronique Joly-Testault; Gaëlle Médiouni-Cloarec; Christine Doublé; Bernadette Martins; Eric Salmon; Manuela Piazza; David Melcher; Mathias Pessiglione; Virginie van Wassenhove; Evelyn Eger; Gaël Varoquaux; Stanislas Dehaene; Lucie Hertz-Pannier; Bertrand Thirion
Journal:  Sci Data       Date:  2020-10-16       Impact factor: 6.444

5.  The role of diversity in complex ICA algorithms for fMRI analysis.

Authors:  Wei Du; Yuri Levin-Schwartz; Geng-Shen Fu; Sai Ma; Vince D Calhoun; Tülay Adalı
Journal:  J Neurosci Methods       Date:  2016-03-15       Impact factor: 2.390

6.  Which fMRI clustering gives good brain parcellations?

Authors:  Bertrand Thirion; Gaël Varoquaux; Elvis Dohmatob; Jean-Baptiste Poline
Journal:  Front Neurosci       Date:  2014-07-01       Impact factor: 4.677

7.  Subject-specific segregation of functional territories based on deep phenotyping.

Authors:  Ana Luísa Pinho; Alexis Amadon; Murielle Fabre; Elvis Dohmatob; Isabelle Denghien; Juan Jesús Torre; Chantal Ginisty; Séverine Becuwe-Desmidt; Séverine Roger; Laurence Laurier; Véronique Joly-Testault; Gaëlle Médiouni-Cloarec; Christine Doublé; Bernadette Martins; Philippe Pinel; Evelyn Eger; Gaël Varoquaux; Christophe Pallier; Stanislas Dehaene; Lucie Hertz-Pannier; Bertrand Thirion
Journal:  Hum Brain Mapp       Date:  2020-12-24       Impact factor: 5.399

  7 in total

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