Literature DB >> 24683389

Topology Based Selection and Curation of Level Sets.

Chandrajit Bajaj1, Andrew Gillette1, Samrat Goswami1.   

Abstract

The selection of appropriate level sets for the quantitative visualization of three dimensional imaging or simulation data is a problem that is both fundamental and essential. The selected level set needs to satisfy several topological and geometric constraints to be useful for subsequent quantitative processing and visualization. For an initial selection of an isosurface, guided by contour tree data structures, we detect the topological features by computing stable and unstable manifolds of the critical points of the distance function induced by the isosurface. We further enhance the description of these features by associating geometric attributes with them. We then rank the attributed features and provide a handle to them for curation of the topological anomalies.

Entities:  

Year:  2009        PMID: 24683389      PMCID: PMC3966476          DOI: 10.1007/978-3-540-88606-8_4

Source DB:  PubMed          Journal:  Math Vis        ISSN: 1612-3786


  5 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Automatic ultrastructure segmentation of reconstructed cryoEM maps of icosahedral viruses.

Authors:  Zeyun Yu; Chandrajit Bajaj
Journal:  IEEE Trans Image Process       Date:  2005-09       Impact factor: 10.856

3.  Computational approaches for automatic structural analysis of large biomolecular complexes.

Authors:  Zeyun Yu; Chandrajit Bajaj
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2008 Oct-Dec       Impact factor: 3.710

4.  Application of new multi-resolution methods for the comparison of biomolecular electrostatic properties in the absence of global structural similarity.

Authors:  Xiaoyu Zhang; Chandrajit L Bajaj; Bongjune Kwon; Todd J Dolinsky; Jens E Nielsen; Nathan A Baker
Journal:  Multiscale Model Simul       Date:  2006       Impact factor: 1.930

5.  On the definition and the construction of pockets in macromolecules.

Authors:  H Edelsbrunner; M Facello; J Liang
Journal:  Pac Symp Biocomput       Date:  1996
  5 in total
  5 in total

1.  Modeling Cardiovascular Anatomy from Patient-Specific Imaging Data.

Authors:  Chandrajit Bajaj; Samrat Goswami
Journal:  Comput Methods Appl Sci       Date:  2009-01-01

2.  AUTOMATIC STRUCTURE INTERPRETATION OF SINGLE PARTICLE CRYO-ELECTRON MICROSCOPY: FROM IMAGES TO PSUEDO-ATOMIC MODELS.

Authors:  Chandrajit L Bajaj
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2007-04-12

3.  Geometric Detection Algorithms for Cavities on Protein Surfaces in Molecular Graphics: A Survey.

Authors:  Tiago Simões; Daniel Lopes; Sérgio Dias; Francisco Fernandes; João Pereira; Joaquim Jorge; Chandrajit Bajaj; Abel Gomes
Journal:  Comput Graph Forum       Date:  2017-06-01       Impact factor: 2.078

4.  Detection of secondary and supersecondary structures of proteins from cryo-electron microscopy.

Authors:  Chandrajit Bajaj; Samrat Goswami; Qin Zhang
Journal:  J Struct Biol       Date:  2011-12-13       Impact factor: 2.867

5.  A Fast Variational Method for the Construction of Resolution Adaptive C-Smooth Molecular Surfaces.

Authors:  Chandrajit L Bajaj; Guoliang Xu; Qin Zhang
Journal:  Comput Methods Appl Mech Eng       Date:  2009-05-01       Impact factor: 6.756

  5 in total

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