Literature DB >> 24681719

A fair comparison.

Paul I Costea1, Georg Zeller1, Shinichi Sunagawa1, Peer Bork1.   

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Year:  2014        PMID： 24681719     DOI： 10.1038/nmeth.2897

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  1 in total

1.  Differential abundance analysis for microbial marker-gene surveys.

Authors:  Joseph N Paulson; O Colin Stine; Héctor Corrada Bravo; Mihai Pop
Journal:  Nat Methods       Date:  2013-09-29       Impact factor: 28.547
  1 in total
  19 in total

1.  Reply to: "a fair comparison".

Authors:  Joseph N Paulson; Héctor Corrada Bravo; Mihai Pop
Journal:  Nat Methods       Date:  2014-04       Impact factor: 28.547

2.  Imbalance of gut microbiome and intestinal epithelial barrier dysfunction in patients with high blood pressure.

Authors:  Seungbum Kim; Ruby Goel; Ashok Kumar; Yanfei Qi; Gil Lobaton; Koji Hosaka; Mohammed Mohammed; Eileen M Handberg; Elaine M Richards; Carl J Pepine; Mohan K Raizada
Journal:  Clin Sci (Lond)       Date:  2018-03-30       Impact factor: 6.124

3.  LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control.

Authors:  Yingtian Hu; Glen A Satten; Yi-Juan Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-22       Impact factor: 12.779

Review 4.  Characterization of the gut microbiome in epidemiologic studies: the multiethnic cohort experience.

Authors:  Benjamin C Fu; Timothy W Randolph; Unhee Lim; Kristine R Monroe; Iona Cheng; Lynne R Wilkens; Loïc Le Marchand; Meredith A J Hullar; Johanna W Lampe
Journal:  Ann Epidemiol       Date:  2016-03-08       Impact factor: 3.797

5.  Associations between microbial communities and key chemical constituents in U.S. domestic moist snuff.

Authors:  Robert E Tyx; Angel J Rivera; Glen A Satten; Lisa M Keong; Peter Kuklenyik; Grace E Lee; Tameka S Lawler; Jacob B Kimbrell; Stephen B Stanfill; Liza Valentin-Blasini; Clifford H Watson
Journal:  PLoS One       Date:  2022-05-04       Impact factor: 3.752

6.  Gastric microbiota and predicted gene functions are altered after subtotal gastrectomy in patients with gastric cancer.

Authors:  Ching-Hung Tseng; Jaw-Town Lin; Hsiu J Ho; Zi-Lun Lai; Chang-Bi Wang; Sen-Lin Tang; Chun-Ying Wu
Journal:  Sci Rep       Date:  2016-02-10       Impact factor: 4.379

7.  Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies.

Authors:  Jonathan Thorsen; Asker Brejnrod; Martin Mortensen; Morten A Rasmussen; Jakob Stokholm; Waleed Abu Al-Soud; Søren Sørensen; Hans Bisgaard; Johannes Waage
Journal:  Microbiome       Date:  2016-11-25       Impact factor: 14.650

8.  Normalization and microbial differential abundance strategies depend upon data characteristics.

Authors:  Sophie Weiss; Zhenjiang Zech Xu; Shyamal Peddada; Amnon Amir; Kyle Bittinger; Antonio Gonzalez; Catherine Lozupone; Jesse R Zaneveld; Yoshiki Vázquez-Baeza; Amanda Birmingham; Embriette R Hyde; Rob Knight
Journal:  Microbiome       Date:  2017-03-03       Impact factor: 14.650

9.  Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in Corals.

Authors:  Shan-Hua Yang; Ching-Hung Tseng; Chang-Rung Huang; Chung-Pin Chen; Kshitij Tandon; Sonny T M Lee; Pei-Wen Chiang; Jia-Ho Shiu; Chaolun A Chen; Sen-Lin Tang
Journal:  Front Microbiol       Date:  2017-06-13       Impact factor: 5.640

10.  Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization.

Authors:  Emily Goren; Chong Wang; Zhulin He; Amy M Sheflin; Dawn Chiniquy; Jessica E Prenni; Susannah Tringe; Daniel P Schachtman; Peng Liu
Journal:  BMC Bioinformatics       Date:  2021-07-06       Impact factor: 3.169
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