Literature DB >> 24680503

Expansion of coverage of Carbohydrate Structure Database (CSDB).

K S Egorova1, P V Toukach2.   

Abstract

The Bacterial Carbohydrate Structure Database (BCSDB), which has been maintained since 2005, was expanded to cover glycans from plants and fungi. The current coverage on plant and fungal glycans includes several thousands of the CarbBank records, as well as data published before 1996 but not deposited in CarbBank. Prior to deposition, the data were verified against the original publications and supplemented with additional information, such as NMR spectra. Both the Bacterial and Plant and Fungal Carbohydrate Structure Databases are freely available at http://csdb.glycoscience.ru.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Bacteria; CSDB; Carbohydrate; Database; Fungi; Plants

Mesh:

Substances:

Year:  2013        PMID: 24680503     DOI: 10.1016/j.carres.2013.10.009

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  7 in total

1.  GlycoRDF: an ontology to standardize glycomics data in RDF.

Authors:  Rene Ranzinger; Kiyoko F Aoki-Kinoshita; Matthew P Campbell; Shin Kawano; Thomas Lütteke; Shujiro Okuda; Daisuke Shinmachi; Toshihide Shikanai; Hiromichi Sawaki; Philip Toukach; Masaaki Matsubara; Issaku Yamada; Hisashi Narimatsu
Journal:  Bioinformatics       Date:  2014-11-11       Impact factor: 6.937

2.  EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data.

Authors:  Khalifeh Al Jadda; Melody P Porterfield; Robert Bridger; Christian Heiss; Michael Tiemeyer; Lance Wells; John A Miller; William S York; Rene Ranzinger
Journal:  Bioinformatics       Date:  2014-09-12       Impact factor: 6.937

3.  GLYDE-II: The GLYcan data exchange format.

Authors:  Rene Ranzinger; Krys J Kochut; John A Miller; Matthew Eavenson; Thomas Lütteke; William S York
Journal:  Perspect Sci (Neth)       Date:  2016-10-20

4.  Examining the diversity of structural motifs in fungal glycome.

Authors:  Philip V Toukach; Ksenia S Egorova
Journal:  Comput Struct Biotechnol J       Date:  2022-09-28       Impact factor: 6.155

5.  Carbohydrate Structure Database: tools for statistical analysis of bacterial, plant and fungal glycomes.

Authors:  K S Egorova; A N Kondakova; Ph V Toukach
Journal:  Database (Oxford)       Date:  2015-09-03       Impact factor: 3.451

6.  Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts.

Authors:  Philip V Toukach; Ksenia S Egorova
Journal:  Nucleic Acids Res       Date:  2015-08-18       Impact factor: 16.971

7.  Structure of the O-Antigen and the Lipid A from the Lipopolysaccharide of Fusobacterium nucleatum ATCC 51191.

Authors:  Pilar Garcia-Vello; Flaviana Di Lorenzo; Dimitra Lamprinaki; Anna Notaro; Immacolata Speciale; Antonio Molinaro; Nathalie Juge; Cristina De Castro
Journal:  Chembiochem       Date:  2020-12-14       Impact factor: 3.164

  7 in total

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