| Literature DB >> 24678273 |
Hafiz M R Khan1, Anshul Saxena2, Elizabeth Ross3, Venkataraghavan Ramamoorthy4, Diana Sheehan5.
Abstract
In this paper we test the statistical probability models for breast cancer survival data for race and ethnicity. Data was collected from breast cancer patients diagnosed in United States during the years 1973-2009. We selected a stratified random sample of Black Hispanic female patients from the Surveillance Epidemiology and End Results (SEER) database to derive the statistical probability models. We used three common model building criteria which include Akaike Information Criteria (AIC), Bayesian Information Criteria (BIC), and Deviance Information Criteria (DIC) to measure the goodness of fit tests and it was found that Black Hispanic female patients survival data better fit the exponentiated exponential probability model. A novel Bayesian method was used to derive the posterior density function for the model parameters as well as to derive the predictive inference for future response. We specifically focused on Black Hispanic race. Markov Chain Monte Carlo (MCMC) method was used for obtaining the summary results of posterior parameters. Additionally, we reported predictive intervals for future survival times. These findings would be of great significance in treatment planning and healthcare resource allocation.Entities:
Mesh:
Year: 2014 PMID: 24678273 PMCID: PMC3942402 DOI: 10.1155/2014/604581
Source DB: PubMed Journal: ScientificWorldJournal ISSN: 1537-744X
Figure 1Selection of stratified random sample of Black Hispanic breast cancer patients from SEER (1973–2009) dataset represented as a pedigree chart.
Figure 2The nine states from which the Black Hispanic breast cancer patients were selected. Note. The Black Hispanic females (n = 298) patients were randomly selected from the dark blue colored nine states in Figure 2.
Frequency distribution of the selected Black Hispanic breast cancer patients from the nine states.
| States | Black Hispanic | |
|---|---|---|
| Count | (%) | |
| Georgia | 94 | 31.5 |
| Hawaii | 1 | 0.3 |
| Iowa | 3 | 1.0 |
| Michigan | 44 | 14.8 |
| New Mexico | 5 | 1.7 |
| Utah | 4 | 1.3 |
| Washington | 9 | 3.0 |
| California | 67 | 22.5 |
| Connecticut | 71 | 23.8 |
|
| ||
| Total | 298 | 100 |
Given below is the marital status, survival time, and age at diagnosis for female Black Hispanic breast cancer patients. Age at diagnosis and survival time are classified by mean, standard deviation (SD), median, range, and quartiles. Marital status is classified into six categories and their respective frequencies are reported.
| Characteristics | Categories | Black Hispanic |
|---|---|---|
| Age at diagnosis (years) | Mean | 54.11 |
| SD | 14.41 | |
| Median | 52 | |
| Quartile | ||
|
| 44 | |
|
| 52 | |
|
| 64 | |
| Variance | 207.65 | |
|
| ||
| Survival time (months) | Mean | 71.38 |
| SD | 61.33 | |
| Median | 50.50 | |
| Quartile | ||
|
| 25 | |
|
| 50.50 | |
|
| 101.25 | |
| Variance | 3761.04 | |
|
| ||
| Marital status at diagnosis | Single | 57 |
| Married | 124 | |
| Separated | 7 | |
| Divorced | 51 | |
| Widowed | 50 | |
| Unknown | 9 | |
Selection of the best model for Black Hispanic females on the basis of AIC, BIC, and DIC criterions.
| Model criterions | AIC | BIC | DIC |
|---|---|---|---|
| Exponentiated exponential | 3136.72 | 3144.11 | 3136.732 |
| Exponentiated Weibull | 3184.25 | 3191.64 | 3182.328 |
| Beta generalized exponential | 3262.20 | 3276.98 | 3256.208 |
| Beta inverse Weibull | 3323.65 | 3334.74 | 3317.650 |
Summary of the results of the posterior parameters from exponentiated exponential for Black Hispanic females breast cancer patients (n = 298).
| Node | Mean | SD | MC error | Median | 95% CI | Sample |
|---|---|---|---|---|---|---|
|
| 1.234 | 0.09684 | 8.94 | 1.231 | (1.053, 1.434) | 50000 |
|
| 0.01595 | 0.001142 | 1.06 | 0.01593 | (0.01377, 0.01824) | 50000 |
|
| 0.2073 | 0.07844 | 7.26 | 0.2076 | (0.05193, 0.3608) | 50000 |
|
| −4.141 | 0.07182 | 6.69 | −4.139 | (−4.285, −4.004) | 50000 |
|
| ||||||
| Dbar | Dhat | pD | ||||
|
| ||||||
| Zeros | 3134.730 | 3132.720 | 2.006 | |||
| Total | 3134.730 | 3132.720 | 2.006 | |||
Dbar: post.mean of −2logL; Dhat: −2logL at post.mean of stochastic nodes.
ρ 1~dunif (−10,10); ρ 2~dunif (−10,10).
Summary of the posterior parameters in the case of BIW for Black Hispanic females breast cancer patients (n = 298).
| Node | Mean | SD | MC error | Median | 95% CI | Sample |
|---|---|---|---|---|---|---|
|
| 1.031 | 0.01789 | 8.38 | 1.03 | (1.001, 1.06) | 50000 |
|
| 1.047 | 0.02736 | 1.21 | 1.047 | (1.002, 1.092) | 50000 |
|
| 402.1 | 1.344 | 0.01014 | 402.5 | (398.4, 403.4) | 50000 |
|
| 5.997 | 0.003353 | 2.53 | 5.998 | (5.988, 6.000) | 50000 |
|
| 0.03002 | 0.01736 | 8.14 | 0.02997 | (0.001484, 0.05849) | 50000 |
|
| 0.0454 | 0.02614 | 1.16 | 0.04559 | (0.00228, 0.08786) | 50000 |
|
| ||||||
| Dbar | Dhat | pD | ||||
|
| ||||||
| Zeros | 3317.650 | 3317.650 | −0.000 | |||
| Total | 3317.650 | 3317.650 | −0.000 | |||
Dbar: post.mean of −2logL; Dhat: −2logL at post.mean of stochastic nodes.
ρ 1~dunif (0,6), ρ 2~dunif (0,0.06), and ρ 3~dunif (0,0.09).
Figure 3Kernel density of the posterior parameters in the case of exponentiated exponential for Black Hispanic females breast cancer patients (n = 298).
Figure 6Kernel density of the posterior parameters in the case of BIW for Black Hispanic females breast cancer patients (n = 298).
Summary results of the posterior parameters for exponentiated Weibull for Black Hispanic females breast cancer patients (n = 298).
| Node | Mean | SD | MC error | Median | 95% CI | Sample |
|---|---|---|---|---|---|---|
|
| 2.743 | 0.02486 | 2.43 | 2.736 | (2.719, 2.809) | 50000 |
|
| 0.8414 | 0.01005 | 9.04 | 0.841 | (0.8227, 0.8625) | 50000 |
|
| 0.04858 | 0.001167 | 1.31 | 0.04892 | (0.04547, 0.04976) | 50000 |
|
| 1.009 | 0.008985 | 8.77 | 1.006 | (1.000, 1.033) | 50000 |
|
| −0.1728 | 0.01193 | 1.07 | −0.1731 | (−0.1952, −0.1479) | 50000 |
|
| −3.025 | 0.02458 | 2.77 | −3.018 | (−3.091, −3.001) | 50000 |
|
| ||||||
| Dbar | Dhat | pD | ||||
|
| ||||||
| Zeros | 3181.290 | 3180.250 | 1.039 | |||
| Total | 3181.290 | 3180.250 | 1.039 | |||
Dbar: post.mean of −2logL; Dhat: −2logL at post.mean of stochastic nodes.
ρ 1~dunif (1, 2); ρ 2~dunif (−10, 1); ρ 3~dunif (−4, − 3).
Figure 4Kernel density of the posterior parameters for the exponentiated Weibull for Black Hispanic females breast cancer patients (n = 298).
Summary results of the posterior parameters in the case of BGE for Black Hispanic females breast cancer patients (n = 298).
| Node | Mean | SD | MC error | Median | 95% CI | Sample |
|---|---|---|---|---|---|---|
|
| 2.735 | 0.01647 | 1.64 | 2.73 | (2.719, 2.779) | 50000 |
|
| 1.006 | 0.005935 | 5.38 | 1.004 | (1.000, 1.022) | 50000 |
|
| 1.029 | 0.02016 | 1.55 | 1.025 | (1.001, 1.069) | 50000 |
|
| 0.02494 | 0.001025 | 7.24 | 0.02492 | (0.02298, 0.02698) | 50000 |
|
| 1.006 | 0.005986 | 5.94 | 1.004 | (1.00, 1.022) | 50000 |
|
| 0.02805 | 0.01952 | 1.51 | 0.02482 | (0.001068, 0.06674) | 50000 |
|
| 0.005888 | 0.005865 | 5.32 | 0.004063 | (1.48 | 50000 |
|
| −3.692 | 0.04112 | 2.91 | −3.692 | (−3.773, −3.613) | 50000 |
|
| ||||||
| Dbar | Dhat | pD | ||||
|
| ||||||
| Zeros | 3255.200 | 3254.200 | 1.004 | |||
| Total | 3255.200 | 3254.200 | 1.004 | |||
Dbar: post.mean of −2logL; Dhat: −2logL at post.mean of stochastic nodes.
ρ 1~dunif (1,2), ρ 2~dunif (0,0.07), ρ 3~dunif (0,1), and ρ 4~dunif (−4, −3).
Figure 5Kernel density of the posterior parameters in the case of beta generalized exponential for Black Hispanic females breast cancer patients (n = 298).
Figure 7The predictive density for a single future response for Black Hispanic survival data.
Predictive inference for Black Hispanic female breast cancer patients survival data.
| Summary | Black Hispanic |
|---|---|
| Mean | 89.7881 |
| SE | 1.2802 |
| Raw moments | |
|
| 89.7881 |
|
| 11339.90 |
|
| 2.0034 × 106 |
|
| 4.39016 × 108 |
| Corrected moments | |
|
| 89.7881 |
|
| 3277.84 |
|
| 396582 |
|
| 7.3029 × 107 |
| Skewness and Kurtosis | |
|
| 4.46582 |
|
| 6.79703 |
|
| 2.11325 |
|
| 3.79703 |
| Predictive intervals | |
| 90% | (28.532, 325.350) |
| 95% | (24.120, 332.450) |
| 98% | (22.013, 346.092) |
| 99% | (21.051, 358.301) |