| Literature DB >> 24676263 |
T Roberts1, C O'Connor, J Nuñez-Garcia, R de la Rua-Domenech, N H Smith.
Abstract
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Year: 2014 PMID: 24676263 PMCID: PMC3995260 DOI: 10.1136/vr.102457
Source DB: PubMed Journal: Vet Rec ISSN: 0042-4900 Impact factor: 2.695
Figure 1.Geographical localisation of the seven confirmed (2012/13), two suspected (2012/13) and one identified from the spoligotype database (2011) cases of Mycobacterium bovis-infected cats in the Newbury area (filled circles). The two northern-most filled circles represent seven overlapping isolates. A selection of tuberculosis breakdowns caused by genotype 10:u in cattle and an alpaca are also shown (grey squares). The first isolation of 10:u was in a cow with tuberculous lesions detected during routine postmortem meat inspection (2008). The home range (a region where the genotype is commonly found in cattle) of the closely related genotype 10:a is shown (hatched). A home range consists of a series of 5 km squares considered ‘in home range’ if a confirmed breakdown of a particular genotype has been recorded in three or more years, in at least two unique holdings, in the last five years. A 10 km buffer is then applied to reduce the ‘swiss cheese’ effect. Inset: The area within the UK is shown
Figure 2.Whole genome sequencing phylogenetic relationship of genotype 10:u isolates from cattle, an alpaca and eight cats and a selection of 10:a isolates from cattle (neighbour joining tree of all single nucleotide polymorphisms [SNPs], scale bar represents 2 SNPs). Heat-killed cultures were sequenced using a MiSeq sequencer (Illumina) and reads were mapped onto reference strain AF2122. The average coverage ranged from 10.7 to 103.2. Cat isolates are indicated by filled triangles and the single SNP present in all 10:u strains is indicated (A). The isolate ‘Cluster1’ (circled) represents six cattle, an alpaca and three cat strains with identical whole genome sequence. The single informative SNP, which marks a separate cluster containing both cattle and cat isolates is marked (B). If cat-to-cattle transmission is discounted then the simplest explanation for the two phylogenetic clusters that contain both cat and cattle isolates is that at least two separate transmissions from local wildlife/cattle have occurred into Newbury cats