| Literature DB >> 24675670 |
Tina Ristau1, Constantin Paun2, Lebriz Ersoy1, Moritz Hahn3, Yara Lechanteur2, Carel Hoyng2, Eiko K de Jong2, Mohamed R Daha4, Bernd Kirchhof1, Anneke I den Hollander2, Sascha Fauser1.
Abstract
Age-related macular degeneration (AMD) is a common condition that leads to severe vision loss and dysregulation of the complement system is thought to be associated with the disease. To investigate associations of polymorphisms in AMD susceptibility genes with systemic complement activation, 2655 individuals were genotyped for 32 single nucleotide polymorphisms (SNPs) in or near 23 AMD associated risk genes. Component 3 (C3) and its catabolic fragment C3d were measured in serum and AMD staging was performed using multimodal imaging. The C3d/C3 ratio was calculated and associations with environmental factors, SNPs and various haplotypes of complement factor H (CFH) genes and complement factor B (CFB) genes were analyzed. Linear models were built to measure the influence of genetic variants on the C3d/C3 ratio. The study cohort included 1387 patients with AMD and 1268 controls. Higher C3d/C3 ratios were found for current smoker (p = 0.002), higher age (p = 1.56 × 10(-7)), AMD phenotype (p = 1.15 × 10(-11)) and the two SNPs in the C3 gene rs6795735 (p = 0.04) and rs2230199 (p = 0.04). Lower C3d/C3 ratios were found for diabetes (p = 2.87 × 10(-6)), higher body mass index (p = 1.00 × 10(-13)), the SNPs rs1410996 (p = 0.0001), rs800292 (p = 0.003), rs12144939 (p = 4.60 × 10(-6)) in CFH, rs4151667 (p = 1.01 × 10(-5)) in CFB and individual haplotypes in CFH and CFB. The linear model revealed a corrected R-square of 0.063 including age, smoking status, gender, and genetic polymorphisms explaining 6.3% of the C3d/C3 ratio. After adding the AMD status the corrected R-square was 0.067. In conclusion, none of the evaluated genetic polymorphisms showed an association with increased systemic complement activation apart from two SNPs in the C3 gene. Major genetic and non-genetic factors for AMD were not associated with systemic complement activation.Entities:
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Year: 2014 PMID: 24675670 PMCID: PMC3968152 DOI: 10.1371/journal.pone.0093459
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Median C3d/C3 ratios for non-genetic factors.
| Non-genetic factor | N (%) | Median C3d/C3 ratio (IQR) | T-test/univariate ANOVA |
| Female sex | 1547 (58.3) | 0.00424 (0.00325–0.00561) | 0.90 |
| Male sex | 1108 (41.7) | 0.00433 (0.00328–0.00567) | |
| Age 50–59 years | 61 (2.3) | 0.00430 (0.00337–0.00598) | 1.56×10−7 |
| Age 60–69 years | 879 (33.1) | 0.00408 (0.00312–0.00550) | |
| Age 70–79 years | 1140 (42.9) | 0.00426 (0.00324–0.00547) | |
| Age 80–89 years | 474 (17.9) | 0.00462 (0.00356–0.00591) | |
| Age 90–99 years | 97 (3.7) | 0.00488 (0.00374–0.00705) | |
| No AMD | 1268 (47.8) | 0.00403 (0.00309–0.00536) | 1.15×10−11 |
| AMD | 1387 (52.2) | 0.00449 (0.00348–0.00586) | |
| No arterial hypertension | 1600 (63.6) | 0.00428 (0.00328–0.00563) | 0.24 |
| Arterial hypertension | 917 (36.4) | 0.00425 (0.00321–0.00556) | |
| No diabetes | 2268 (90.8) | 0.00430 (0.00330–0.00567) | 2.87×10−6 |
| Diabetes | 231 (9.2) | 0.00390 (0.00295–0.00495) | |
| No rheumatoid arthritis | 2353 (93.5) | 0.00426 (0.00327–0.00559) | 0.35 |
| Rheumatoid arthritis | 164 (6.5) | 0.00433 (0.00304–0.00564) | |
| No thyroid disease | 2119 (84.2) | 0.00426 (0.00326–0.00559) | 0.77 |
| Thyroid disease | 398 (15.8) | 0.00429 (0.00325–0.00559) | |
| No kidney disease | 2403 (95.5) | 0.00426 (0.00326–0.00559) | 0.92 |
| Kidney disease | 114 (4.5) | 0.00447 (0.00320–0.00572) | |
| No allergy | 1984 (78.8) | 0.00428 (0.00325–0.00562) | 0.75 |
| Allergy | 533 (21.2) | 0.00425 (0.00328–0.00552) | |
| Never smoker | 1029 (43.0) | 0.00431 (0.00325–0.00572) | 0.002 |
| Past smoker | 1164 (48.6) | 0.00415 (0.00320–0.00545) | |
| Current smoker | 201 (8.4) | 0.00451 (0.00355–0.00584) | |
| BMI <25 | 930 (40.1) | 0.00464 (0.00360–0.00611) | 1.00×10−13 |
| BMI 25–29 | 1084 (46.7) | 0.00408 (0.00312–0.00531) | |
| BMI ≥30 | 308 (13.3) | 0.00376 (0.00287–0.00493) |
IQR = interquartile range (1st quartile – 3rd quartile).
Median C3d/C3 ratios for single nucleotid polymorphisms (SNPs).
| SNP | Homozygous non-variant (n) | Heterozygous variant (n) | Homozygous variant (n) | Median C3d/C3 ratio homozygous non-variant (IQR) | Median C3d/C3 ratio heterozygous variant (IQR) | Median C3d/C3 ratio homozygous variant (IQR) | Univariate ANOVA |
| ARMS2 | GG = 1039 | GT = 825 | TT = 241 | 0.00425 | 0.00416 | 0.00446 | 0.31 |
| rs10490924 | (0.00338–0.00589) | (0.00320–0.00556) | (0.00336–0.00593) | ||||
| CFH | TT = 690 | TC = 967 | CC = 436 | 0.00425 | 0.00418 | 0.00433 | 0.66 |
| rs1061170 | (0.00320–0.00560) | (0.00323–0.00546) | (0.00335–0.00561) | ||||
| CFH | CC = 459 | CT = 453 | TT = 113 | 0.00436 | 0.00404 | 0.00355 | 0.0001 |
| rs1410996 | (0.00334–0.00570) | (0.00310–0.00529) | (0.00209–0.00491) | ||||
| CFH | GG = 1177 | GA = 608 | AA = 95 | 0.00427 | 0.00406 | 0.00394 | 0.003 |
| rs800292 | (0.00329–0.00567) | (0.00312–0.00535) | (0.00319–0.00516) | ||||
| CFH | GG = 1290 | GT = 537 | TT = 64 | 0.00435 | 0.00390 | 0.00373 | 4.60×10−6 |
| rs12144939 | (0.00329–0.00570) | (0.00305–0.00510) | (0.00287–0.00469) | ||||
| CFI | TT = 499 | TC = 1056 | CC = 547 | 0.00426 | 0.00420 | 0.00424 | 0.80 |
| rs10033900 | (0.00324–0.00570) | (0.003.24–0.00553) | (0.00325–0.00547) | ||||
| CFI | GG = 1862 | GA = 10 | AA = 0 | 0.00419 | 0.00485 | N/A | 0.18 |
| rs141853578 | (0.00321–0.00553) | (0.00415–0.00673) | |||||
| C2 | CC = 927 | CG = 70 | GG = 0 | 0.00422 | 0.00362 | N/A | 0.05 |
| rs9332739 | (0.00320–0.00544) | (0.00299–0.00492) | |||||
| C3 | CC = 1300 | GC = 713 | GG = 115 | 0.00415 | 0.00432 | 0.00432 | 0.04 |
| rs2230199 | (0.00319–0.00549) | (0.00334–0.00561) | (0.00327–0.00627) | ||||
| C3 | CC = 723 | CT = 900 | TT = 261 | 0.00420 | 0.00420 | 0.00421 | 0.81 |
| rs433594 | (0.00320–0.00557) | (0.00323–0.00555) | (0.00328–0.00548) | ||||
| C3 | GG = 1197 | GA = 617 | AA = 84 | 0.00413 | 0.00424 | 0.00448 | 0.04 |
| rs6795735 | (0.00317–0.00549) | (0.00334–0.00550) | (0.00333–0.00640) | ||||
| CFB | TT = 1958 | TA = 160 | AA = 2 | 0.00428 | 0.00358 | 0.00497 | 1.01×10−5 |
| rs4151667 | (0.00327–0.00562) | (0.00297–0.00472) | (N/A) | ||||
| CFB | GG = 1616 | GA = 265 | AA = 7 | 0.00421 | 0.00414 | 0.00311 | 0.69 |
| rs641153 | (0.00324–0.00556) | (0.00314–0.00559) | (0.00223–0.00335) | ||||
| CFD | TT = 488 | TC = 407 | CC = 93 | 0.00404 | 0.00421 | 0.00413 | 0.95 |
| rs3826945 | (0.00320–0.00542) | (0.00319–0.00531) | (0.00308–0.00525) | ||||
| LPL | AA = 1705 | AG = 388 | GG = 31 | 0.00423 | 0.00423 | 0.00479 | 0.89 |
| rs12678919 | (0.00321–0.00561) | (0.00338–0.00542) | (0.00342–0.00593) | ||||
| LIPC | CC = 1057 | CT = 888 | TT = 144 | 0.00421 | 0.00423 | 0.00441 | 0.46 |
| rs10468017 | (0.00322–0.00546) | (0.00322–0.00562) | (0.00337–0.00558) | ||||
| TIMP3 | AA = 882 | AC = 77 | CC = 7 | 0.00411 | 0.00425 | 0.00392 | 0.70 |
| rs9621532 | (0.00318–0.00531) | (0.00332–0.00543) | (0.00376–0.00584) | ||||
| APOE2 | CC = 804 | CT = 160 | TT = 12 | 0.00420 | 0.00393 | 0.00417 | 0.53 |
| rs7412 | (0.00322–0.00543) | (0.00306–0.00524) | (0.00301–0.00485) | ||||
| APOE4 | TT = 689 | TC = 195 | CC = 9 | 0.00420 | 0.00396 | 0.00272 | 0.49 |
| rs429358 | (0.00320–0.00537) | (0.00311–0.00530) | (0.00253–0.00609) | ||||
| FADS1 | TT = 995 | TC = 924 | CC = 209 | 0.00432 | 0.00416 | 0.00394 | 0.05 |
| rs174547 | (0.00330–0.00567) | (0.00319–0.00557) | (0.00334–0.00508) | ||||
| CETP | GG = 997 | GT = 906 | TT = 246 | 0.00420 | 0.00424 | 0.00428 | 0.91 |
| rs2230199 | (0.00328–0.00559) | (0.00320–0.00546) | (0.00324–0.00568) | ||||
| TLR | AA = 872 | AG = 119 | GG = 5 | 0.00419 | 0.00408 | 0.00283 | 0.24 |
| rs4986790 | (0.00319–0.00539) | (0.00333–0.00530) | (0.00248–0.00441) | ||||
| TLR3 | CC = 497 | CT = 380 | TT = 86 | 0.00401 | 0.00420 | 0.00430 | 0.31 |
| rs3775291 | (0.00306–0.00561) | (0.00333–0.00513) | (0.00320–0.00594) | ||||
| SERPING | GG = 322 | GA = 485 | AA = 183 | 0.00410 | 0.00410 | 0.00428 | 0.56 |
| rs2511989 | (0.00317–0.00529) | (0.00322–0.00542) | (0.00316–0.00546) | ||||
| ABCA4 | GG = 985 | GA = 15 | AA = 0 | 0.00418 | 0.00368 | N/A | 0.17 |
| rs1800555 | (0.00319–0.00538) | (0.00337–0.00440) | |||||
| ABCA4 | GG = 975 | GA = 4 | AA = 0 | 0.00415 | 0.004.47 | N/A | 0.87 |
| rs1800553 | (0.00320–0.00538) | (0.00289–0.00659) | |||||
| ABCA4 | GG = 1854 | CG = 31 | CC = 0 | 0.00419 | 0.00443 | N/A | 0.81 |
| rs76157638 | (0.00321–0.00556) | (0.00332–0.00521) | |||||
| VEGFA | AA = 629 | AG = 322 | GG = 42 | 0.00425 | 0.00400 | 0.00376 | 0.14 |
| rs699946 | (0.00327–0.00543) | (0.00303–0.00540) | (0.00324–0.00467) | ||||
| SPRYD7 | TT = 714 | TC = 220 | CC = 21 | 0.00418 | 0.00433 | 0.00390 | 0.30 |
| rs7995557 | (0.00322–0.00537) | (0.00317–0.00558) | (0.00255–0.00503) | ||||
| COL8A1 | GG = 1545 | GT = 333 | TT = 13 | 0.00421 | 0.00420 | 0.00502 | 0.73 |
| rs13081855 | (0.00322–0.00558) | (0.00321–0.00543) | (0.00342–0.00566) | ||||
| COL10A1 | AA = 742 | AT = 899 | TT = 241 | 0.00424 | 0.00411 | 0.00440 | 0.87 |
| rs3812111 | (0.00319–0.00555) | (0.00323–0.00548) | (0.00330–0.00575) | ||||
| SLC16A8 | CC = 1155 | CT = 632 | TT = 86 | 0.00421 | 0.00420 | 0.00423 | 0.83 |
| rs8135665 | (0.00324–0.00556) | (0.00319–0.00556) | (0.00312–0.00563) | ||||
| ADAMTS9 | CC = 647 | CT = 898 | TT = 343 | 0.00425 | 0.00419 | 0.00412 | 0.57 |
| rs6795735 | (0.00320–0.00572) | (0.00325–0.00540) | (0.00313–0.00561) |
*Due to small number of cases excluded from univariate ANOVA analysis; IQR = interquartile range (1st quartile – 3rd quartile).
Haplotypes for CFH/CFB and median C3d/C3 ratios.
| Haplotype CFH | n | Haplotype frequency | MedianC3d/C3 ratio (IQR) | T-test |
| TGG | 728 | 0.20 | 0.00456 (0.00345–0.00608) | - |
| CGG | 1544 | 0.42 | 0.00420 (0.00324–0.00550) | 1.40×10−8 |
| TAG | 755 | 0.20 | 0.00405 (0.00314–0.00530) | 3.61×10−12 |
| TGT | 620 | 0.17 | 0.00386 (0.00300–0.00504) | 1.03×10−13 |
| CAG | 21 | 0.008 | 0.00396 (0.00339–0.00507) | -** |
| TAT | 18 | 0.005 | 0.00386 (0.00317–0.00513) | -** |
| Haplotype CFB | n | Haplotype frequency | MedianC3d/C3 ratio (IQR) | T-test |
| TG | 3337 | 0.89 | 0.00424 (0.00325–0.00559) | - |
| TA | 279 | 0.07 | 0.00408 (0.00310–0.00546) | 0.15 |
| AG | 152 | 0.04 | 0.00356 (0.00292–0.00471) | 9.96×10−6 |
For CFH single nucleotides polymorphisms rs1061170, rs800292, and rs12144939 and for CFB rs4151667 and rs641153 were chosen.
*T- test with comparison to reference haplotypes TGG and TG; **Due to small number of cases excluded from analysis; IQR = interquartile range (1st quartile – 3rd quartile).
Figure 1Logarithmic C3d/C3 ratios for haplotypes in the CFH gene rs1061170, rs800292 and rs12144939.
Figure 2Logarithmic C3d/C3 ratios for haplotypes in the CFB gene rs4151667 and rs641153.
Logistic regression analysis between AMD and single nucleotide polymorphisms SNPs+.
| SNP | Heterozygous variant | Homozygous variant | ||||
| OR | 95% CI | P-value | OR | 95% CI | P-value | |
| ARMS2 rs10490924 | 2.32 | 1.90–2.84 | 1.00×10−13 | 8.13 | 5.66–11.69 | 1.00×10−13 |
| CFH rs1061170 | 1.57 | 1.27–1.95 | 3.16×10−5 | 3.70 | 2.82–4.85 | 1.00×10−13 |
| CFH rs1410996 | 0.36 | 0.27–0.48 | 5.05×10−12 | 0.23 | 0.15–0.36 | 1.28×10−13 |
| CFH rs800292 | 0.61 | 0.49–0.75 | 5.38×10−6 | 0.70 | 0.44–1.10 | 0.12 |
| CFH rs12144939 | 0.57 | 0.47–0.71 | 6.71×10−7 | 0.51 | 0.28–0.91 | 0.02 |
| CFI rs10033900 | 1.07 | 0.85–1.35 | 0.59 | 0.99 | 0.76–1.28 | 0.93 |
| CFI rs141853578 | 1.17 | 0.96–1.43 | 0.12 | -* | -* | -* |
| C2 rs9332739 | 0.70 | 0.42–1.17 | 0.17 | -* | -* | -* |
| C3 rs2230199 | 1.17 | 0.96–1.42 | 0.11 | 2.17 | 1.42–3.31 | 0.0004 |
| C3 rs433594 | 0.98 | 0.80–1.21 | 0.88 | 0.91 | 0.67–1.23 | 0.52 |
| C3 rs6795735 | 1.10 | 0.89–1.36 | 0.37 | 2.06 | 1.27–3.33 | 0.03 |
| CFB rs4151667 | 0.74 | 0.52–1.05 | 0.08 | -* | -* | -* |
| CFB rs641153 | 0.72 | 0.54–0.96 | 0.02 | -* | -* | -* |
| CFD rs3826945 | 1.01 | 0.76–1.34 | 0.94 | 0.76 | 0.48–1.22 | 0.26 |
| LPL rs12678919 | 1.02 | 0.80–1.29 | 0.89 | 1.11 | 0.51–2.43 | 0.79 |
| LIPC rs10468017 | 0.94 | 0.78–1.14 | 0.53 | 0.63 | 0.43–0.93 | 0.19 |
| TIMP3 rs9621532 | 0.86 | 0.52–1.42 | 0.56 | -* | -* | -* |
| APOE2 rs7412 | 1.21 | 0.84–1.76 | 0.31 | -* | -* | -* |
| APOE4 rs429358 | 0.84 | 0.60–1.17 | 0.30 | -* | -* | -* |
| FADS1 rs174547 | 0.88 | 0.72–1.06 | 0.18 | 0.64 | 0.46–0.88 | 0.006 |
| CETP rs2230199 | 1.39 | 1.15–1.70 | 0.001 | 1.38 | 1.02–1.87 | 0.04 |
| TLR rs4986790 | 1.08 | 0.71–1.64 | 0.71 | 0.53 | 0.08–3.36 | 0.50 |
| TLR3 rs3775291 | 1.00 | 0.75–1.34 | 0.99 | 0.78 | 0.48–1.27 | 0.32 |
| SERPING rs2511989 | 1.10 | 0.81–1.50 | 0.53 | 0.79 | 0.54–1.16 | 0.22 |
| ABCA4D2177 rs1800555 | 0.96 | 0.33–2.82 | 0.94 | -* | -* | -* |
| ABCA4G1961 rs1800553 | 0.88 | 0.12–6.58 | 0.90 | -* | -* | -* |
| ABCA4 rs76157638 | 2.14 | 0.98–4.67 | 0.06 | -* | -* | -* |
| VEGFA rs699946 | 1.08 | 0.81–1.44 | 0.61 | 1.47 | 0.75.2.89 | 0.27 |
| SPRYD7 rs7995557 | 1.01 | 0.73–1.40 | 0.95 | 0.57 | 0.23–1.43 | 0.23 |
| COL8A1 rs13081855 | 1.03 | 0.80–1.33 | 0.82 | 0.53 | 0.16–1.74 | 0.30 |
| COL10A1 rs3812111 | 1.04 | 0.84–1.28 | 0.73 | 1.02 | 0.75–1.40 | 0.89 |
| SLC16A8 rs8135665 | 1.21 | 0.98–1.49 | 0.08 | 1.39 | 0.87–2.21 | 0.17 |
| ADAMTS9-AS2 rs6795735 | 1.21 | 0.98–1.51 | 0.08 | 1.30 | 0.98–1.72 | 0.07 |
Adjusted for age and gender; *analysis not performed due to small group size.