Literature DB >> 24675519

Ancient human oral plaque preserves a wealth of biological data.

Jessica L Metcalf1, Luke K Ursell1, Rob Knight1.   

Abstract

A new study explores the ancient oral microbiome from the well-preserved dental calculus samples of four human individuals who lived during medieval times, using a suite of genomic, proteomic and microscopic approaches. The authors investigate the evolution of dental pathogens by reconstructing the genome of the periodontal pathogen Tannerella forsythia and also identify antibiotic resistance genes, bacterial virulence factors and host immune defense proteins.

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Year:  2014        PMID： 24675519     DOI： 10.1038/ng.2930

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  13 in total

1.  The bacterial microbiota in the oral mucosa of rural Amerindians.

Authors:  Monica Contreras; Elizabeth K Costello; Glida Hidalgo; Magda Magris; Rob Knight; Maria G Dominguez-Bello
Journal:  Microbiology       Date:  2010-09-16       Impact factor: 2.777

2.  Gastroprotective and blood pressure lowering effects of dietary nitrate are abolished by an antiseptic mouthwash.

Authors:  Joel Petersson; Mattias Carlström; Olof Schreiber; Mia Phillipson; Gustaf Christoffersson; Annika Jägare; Stefan Roos; Emmelie A Jansson; A Erik G Persson; Jon O Lundberg; Lena Holm
Journal:  Free Radic Biol Med       Date:  2009-01-21       Impact factor: 7.376

3.  Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.

Authors:  Carlotta De Filippo; Duccio Cavalieri; Monica Di Paola; Matteo Ramazzotti; Jean Baptiste Poullet; Sebastien Massart; Silvia Collini; Giuseppe Pieraccini; Paolo Lionetti
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-02       Impact factor: 11.205

4.  Second-pandemic strain of Vibrio cholerae from the Philadelphia cholera outbreak of 1849.

Authors:  Alison M Devault; G Brian Golding; Nicholas Waglechner; Jacob M Enk; Melanie Kuch; Joseph H Tien; Mang Shi; David N Fisman; Anna N Dhody; Stephen Forrest; Kirsten I Bos; David J D Earn; Edward C Holmes; Hendrik N Poinar
Journal:  N Engl J Med       Date:  2014-01-08       Impact factor: 91.245

5.  Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions.

Authors:  Christina J Adler; Keith Dobney; Laura S Weyrich; John Kaidonis; Alan W Walker; Wolfgang Haak; Corey J A Bradshaw; Grant Townsend; Arkadiusz Sołtysiak; Kurt W Alt; Julian Parkhill; Alan Cooper
Journal:  Nat Genet       Date:  2013-02-17       Impact factor: 38.330

6.  A draft genome of Yersinia pestis from victims of the Black Death.

Authors:  Kirsten I Bos; Verena J Schuenemann; G Brian Golding; Hernán A Burbano; Nicholas Waglechner; Brian K Coombes; Joseph B McPhee; Sharon N DeWitte; Matthias Meyer; Sarah Schmedes; James Wood; David J D Earn; D Ann Herring; Peter Bauer; Hendrik N Poinar; Johannes Krause
Journal:  Nature       Date:  2011-10-12       Impact factor: 49.962

7.  Pathogens and host immunity in the ancient human oral cavity.

Authors:  Christina Warinner; João F Matias Rodrigues; Rounak Vyas; Christian Trachsel; Natallia Shved; Jonas Grossmann; Anita Radini; Y Hancock; Raul Y Tito; Sarah Fiddyment; Camilla Speller; Jessica Hendy; Sophy Charlton; Hans Ulrich Luder; Domingo C Salazar-García; Elisabeth Eppler; Roger Seiler; Lars H Hansen; José Alfredo Samaniego Castruita; Simon Barkow-Oesterreicher; Kai Yik Teoh; Christian D Kelstrup; Jesper V Olsen; Paolo Nanni; Toshihisa Kawai; Eske Willerslev; Christian von Mering; Cecil M Lewis; Matthew J Collins; M Thomas P Gilbert; Frank Rühli; Enrico Cappellini
Journal:  Nat Genet       Date:  2014-02-23       Impact factor: 38.330

8.  Acute blood pressure lowering, vasoprotective, and antiplatelet properties of dietary nitrate via bioconversion to nitrite.

Authors:  Andrew J Webb; Nakul Patel; Stavros Loukogeorgakis; Mike Okorie; Zainab Aboud; Shivani Misra; Rahim Rashid; Philip Miall; John Deanfield; Nigel Benjamin; Raymond MacAllister; Adrian J Hobbs; Amrita Ahluwalia
Journal:  Hypertension       Date:  2008-02-04       Impact factor: 10.190

9.  Human gut microbiome viewed across age and geography.

Authors:  Tanya Yatsunenko; Federico E Rey; Mark J Manary; Indi Trehan; Maria Gloria Dominguez-Bello; Monica Contreras; Magda Magris; Glida Hidalgo; Robert N Baldassano; Andrey P Anokhin; Andrew C Heath; Barbara Warner; Jens Reeder; Justin Kuczynski; J Gregory Caporaso; Catherine A Lozupone; Christian Lauber; Jose Carlos Clemente; Dan Knights; Rob Knight; Jeffrey I Gordon
Journal:  Nature       Date:  2012-05-09       Impact factor: 49.962

10.  Phylotyping and functional analysis of two ancient human microbiomes.

Authors:  Raúl Y Tito; Simone Macmil; Graham Wiley; Fares Najar; Lauren Cleeland; Chunmei Qu; Ping Wang; Frederic Romagne; Sylvain Leonard; Agustín Jiménez Ruiz; Karl Reinhard; Bruce A Roe; Cecil M Lewis
Journal:  PLoS One       Date:  2008-11-11       Impact factor: 3.240
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  8 in total

1.  Evaluation of Copper Levels in Dental Calculus of OSF Patients with Chewing Dried Areca-Nut Quids in Hunan Province of Mainland China.

Authors:  Xi-Fan He; Hui Wang; Ye Tian; Te Zhang; Zhi-Peng Qiu; Xiao-Jiao Cui; Jing-Sha Zhou; Xin-Lan Yan; Yi-Wei Wu; Yi-Sha Pan; Yang-Bo Ning; Lin Chen; Kun-Lun Zhang; Wei-Hao Zhao; David Sharma; Xiao-Dan Tan; Michael Bo Zhang
Journal:  Biol Trace Elem Res       Date:  2022-03-24       Impact factor: 3.738

Review 2.  Exploring Relationships between Host Genome and Microbiome: New Insights from Genome-Wide Association Studies.

Authors:  Muslihudeen A Abdul-Aziz; Alan Cooper; Laura S Weyrich
Journal:  Front Microbiol       Date:  2016-10-12       Impact factor: 5.640

Review 3.  Oral microbiomes: more and more importance in oral cavity and whole body.

Authors:  Lu Gao; Tiansong Xu; Gang Huang; Song Jiang; Yan Gu; Feng Chen
Journal:  Protein Cell       Date:  2018-05-07       Impact factor: 14.870

4.  Metagenomic analysis of dental calculus in ancient Egyptian baboons.

Authors:  Claudio Ottoni; Meriam Guellil; Andrew T Ozga; Anne C Stone; Oliver Kersten; Barbara Bramanti; Stéphanie Porcier; Wim Van Neer
Journal:  Sci Rep       Date:  2019-12-23       Impact factor: 4.379

5.  Exploring late Paleolithic and Mesolithic diet in the Eastern Alpine region of Italy through multiple proxies.

Authors:  Gregorio Oxilia; Eugenio Bortolini; Federica Badino; Federico Bernardini; Valentina Gazzoni; Federico Lugli; Matteo Romandini; Anita Radini; Gabriele Terlato; Giulia Marciani; Sara Silvestrini; Jessica C Menghi Sartorio; Ursula Thun Hohenstein; Luca Fiorenza; Ottmar Kullmer; Claudio Tuniz; Jacopo Moggi Cecchi; Sahra Talamo; Federica Fontana; Marco Peresani; Stefano Benazzi; Emanuela Cristiani
Journal:  Am J Phys Anthropol       Date:  2020-09-11       Impact factor: 2.868

6.  What could you do with 400 years of biological history on african americans? Evaluating the potential scientific benefit of systematic studies of dental and skeletal materials on African Americans from the 17th through 20th centuries.

Authors:  Fatimah Jackson; Latifa Jackson; Christopher Cross; Cameron Clarke
Journal:  Am J Hum Biol       Date:  2016-01-09       Impact factor: 1.937

7.  Oral health status in historic population: Macroscopic and metagenomic evidence.

Authors:  Claire Willmann; Xavier Mata; Kristian Hanghoej; Laure Tonasso; Lenka Tisseyre; Céline Jeziorski; Elodie Cabot; Pierre Chevet; Eric Crubézy; Ludovic Orlando; Rémi Esclassan; Catherine Thèves
Journal:  PLoS One       Date:  2018-05-16       Impact factor: 3.240

8.  Dental Calculus as a Potential Biosource for Human Papillomavirus Detection in Oral Squamous Cell Carcinoma.

Authors:  Natallia Pranata; Ani Melani Maskoen; Edhyana Sahiratmadja; Sunardhi Widyaputra
Journal:  Asian Pac J Cancer Prev       Date:  2020-10-01
  8 in total

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