Literature DB >> 24653038

Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective.

Katrina Lythgoe1, Sebastian Bonhoeffer2, Christophe Fraser1, Gabriel E Leventhal2, George Shirreff2, T Déirdre Hollingsworth3,4,5, Samuel Alizon6.   

Abstract

Why some individuals develop AIDS rapidly whereas others remain healthy without treatment for many years remains a central question of HIV research. An evolutionary perspective reveals an apparent conflict between two levels of selection on the virus. On the one hand, there is rapid evolution of the virus in the host, and on the other, new observations indicate the existence of virus factors that affect the virulence of infection whose influence persists over years in infected individuals and across transmission events. Here, we review recent evidence that shows that viral genetic factors play a larger role in modulating disease severity than anticipated. We propose conceptual models that reconcile adaptive evolution at both levels of selection. Evolutionary analysis provides new insight into HIV pathogenesis.

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Year:  2014        PMID: 24653038      PMCID: PMC5034889          DOI: 10.1126/science.1243727

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  66 in total

1.  HIV RNA levels in transmission sources only weakly predict plasma viral load in recipients.

Authors:  Antoinette C van der Kuyl; Suzanne Jurriaans; Georgios Pollakis; Margreet Bakker; Marion Cornelissen
Journal:  AIDS       Date:  2010-06-19       Impact factor: 4.177

2.  Virulence evolution and the trade-off hypothesis: history, current state of affairs and the future.

Authors:  S Alizon; A Hurford; N Mideo; M Van Baalen
Journal:  J Evol Biol       Date:  2009-02       Impact factor: 2.411

3.  A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase.

Authors:  Trevor Hinkley; João Martins; Colombe Chappey; Mojgan Haddad; Eric Stawiski; Jeannette M Whitcomb; Christos J Petropoulos; Sebastian Bonhoeffer
Journal:  Nat Genet       Date:  2011-03-27       Impact factor: 38.330

4.  The extent of early viral replication is a critical determinant of the natural history of simian immunodeficiency virus infection.

Authors:  J D Lifson; M A Nowak; S Goldstein; J L Rossio; A Kinter; G Vasquez; T A Wiltrout; C Brown; D Schneider; L Wahl; A L Lloyd; J Williams; W R Elkins; A S Fauci; V M Hirsch
Journal:  J Virol       Date:  1997-12       Impact factor: 5.103

5.  Coevolution of hosts and parasites.

Authors:  R M Anderson; R M May
Journal:  Parasitology       Date:  1982-10       Impact factor: 3.234

6.  Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission.

Authors:  Joshua T Herbeck; Viktor Müller; Brandon S Maust; Bruno Ledergerber; Carlo Torti; Simona Di Giambenedetto; Luuk Gras; Huldrych F Günthard; Lisa P Jacobson; James I Mullins; Geoffrey S Gottlieb
Journal:  AIDS       Date:  2012-01-14       Impact factor: 4.177

7.  HIV gp120 inhibits T cell activation by interfering with expression of costimulatory molecules CD40 ligand and CD80 (B71).

Authors:  N Chirmule; T W McCloskey; R Hu; V S Kalyanaraman; S Pahwa
Journal:  J Immunol       Date:  1995-07-15       Impact factor: 5.422

8.  Immune activation set point during early HIV infection predicts subsequent CD4+ T-cell changes independent of viral load.

Authors:  Steven G Deeks; Christina M R Kitchen; Lea Liu; Hua Guo; Ron Gascon; Amy B Narváez; Peter Hunt; Jeffrey N Martin; James O Kahn; Jay Levy; Michael S McGrath; Frederick M Hecht
Journal:  Blood       Date:  2004-04-29       Impact factor: 22.113

9.  HLA allele sharing and HIV type 1 viremia in seroconverting Zambians with known transmitting partners.

Authors:  Jianming Tang; Shenghui Tang; Elena Lobashevsky; Isaac Zulu; Grace Aldrovandi; Susan Allen; Richard A Kaslow
Journal:  AIDS Res Hum Retroviruses       Date:  2004-01       Impact factor: 2.205

10.  Microbial translocation is a cause of systemic immune activation in chronic HIV infection.

Authors:  Jason M Brenchley; David A Price; Timothy W Schacker; Tedi E Asher; Guido Silvestri; Srinivas Rao; Zachary Kazzaz; Ethan Bornstein; Olivier Lambotte; Daniel Altmann; Bruce R Blazar; Benigno Rodriguez; Leia Teixeira-Johnson; Alan Landay; Jeffrey N Martin; Frederick M Hecht; Louis J Picker; Michael M Lederman; Steven G Deeks; Daniel C Douek
Journal:  Nat Med       Date:  2006-11-19       Impact factor: 53.440

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  110 in total

1.  Replication Capacity of Viruses from Acute Infection Drives HIV-1 Disease Progression.

Authors:  Philippe Selhorst; Carina Combrinck; Nonkululeko Ndabambi; Sherazaan D Ismail; Melissa-Rose Abrahams; Miguel Lacerda; Natasha Samsunder; Nigel Garrett; Quarraisha Abdool Karim; Salim S Abdool Karim; Carolyn Williamson
Journal:  J Virol       Date:  2017-03-29       Impact factor: 5.103

Review 2.  Defining the roles for Vpr in HIV-1-associated neuropathogenesis.

Authors:  Tony James; Michael R Nonnemacher; Brian Wigdahl; Fred C Krebs
Journal:  J Neurovirol       Date:  2016-04-07       Impact factor: 2.643

3.  Evolution of the Envelope Glycoprotein of HIV-1 Clade B toward Higher Infectious Properties over the Course of the Epidemic.

Authors:  Laurence Meyer; Francis Barin; Mélanie Bouvin-Pley; Maxime Beretta; Alain Moreau; Emmanuelle Roch; Asma Essat; Cécile Goujard; Marie-Laure Chaix; Nathalie Moiré; Loïc Martin; Martine Braibant
Journal:  J Virol       Date:  2019-03-05       Impact factor: 5.103

4.  Dysregulation of autophagy by HIV-1 Nef in human astrocytes.

Authors:  A Sami Saribas; Kamel Khalili; Ilker Kudret Sariyer
Journal:  Cell Cycle       Date:  2015-07-15       Impact factor: 4.534

Review 5.  Crossing the scale from within-host infection dynamics to between-host transmission fitness: a discussion of current assumptions and knowledge.

Authors:  Andreas Handel; Pejman Rohani
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-08-19       Impact factor: 6.237

6.  Reply to Jefferys: Declining HIV virulence.

Authors:  Rebecca Payne; Maximilian Muenchhoff; Philip J R Goulder
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-24       Impact factor: 11.205

7.  Replicative fitness of transmitted HIV-1 drives acute immune activation, proviral load in memory CD4+ T cells, and disease progression.

Authors:  Daniel T Claiborne; Jessica L Prince; Eileen Scully; Gladys Macharia; Luca Micci; Benton Lawson; Jakub Kopycinski; Martin J Deymier; Thomas H Vanderford; Krystelle Nganou-Makamdop; Zachary Ende; Kelsie Brooks; Jianming Tang; Tianwei Yu; Shabir Lakhi; William Kilembe; Guido Silvestri; Daniel Douek; Paul A Goepfert; Matthew A Price; Susan A Allen; Mirko Paiardini; Marcus Altfeld; Jill Gilmour; Eric Hunter
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-17       Impact factor: 11.205

8.  Modelling the evolution of viral oncogenesis.

Authors:  Carmen Lía Murall; Samuel Alizon
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-05-27       Impact factor: 6.237

Review 9.  Microbial genome-wide association studies: lessons from human GWAS.

Authors:  Robert A Power; Julian Parkhill; Tulio de Oliveira
Journal:  Nat Rev Genet       Date:  2016-11-14       Impact factor: 53.242

10.  Factors Leading to the Loss of Natural Elite Control of HIV-1 Infection.

Authors:  María Pernas; Laura Tarancón-Diez; Cecilio Lopez-Galindez; Ezequiel Ruiz-Mateos; Esther Rodríguez-Gallego; Josep Gómez; Julia G Prado; Concepción Casado; Beatriz Dominguez-Molina; Isabel Olivares; Maite Coiras; Agathe León; Carmen Rodriguez; Jose Miguel Benito; Norma Rallón; Montserrat Plana; Onofre Martinez-Madrid; Marta Dapena; Jose Antonio Iribarren; Jorge Del Romero; Felipe García; José Alcamí; MaÁngeles Muñoz-Fernández; Francisco Vidal; Manuel Leal
Journal:  J Virol       Date:  2018-02-12       Impact factor: 5.103

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