Literature DB >> 24649523

The chloroplast genomes of conifers lack one of the rRNA-encoding inverted repeats.

J Lidholm, A E Szmidt, J E Hällgren, P Gustafsson.   

Abstract

Chloroplast DNS from species of five different conifer genera was extracted and studied by Southern blot analysis. For all these species, hybridization with heterologous probes specific for 16 S and 23 S rDNA detected only one chloroplast DNA fragment per enzyme digest. This observation suggests that the 16 S and 23 S rRNA genes are not duplicated in these genomes. The unique 16 S rDNA-containing BamHI fragment from Pinus contorta Dougl. was clones and restriction mapped. Apart from the 16 S rRNA gene, this fragment also contained the psbC and psbD genes. It is concluded that the chloroplast genomes of a wide taxonomic range of conifers lack one of the inverted repeat elements and that a dislocation of the psbDC gene cluster has occurred in P. contorta.

Entities:  

Year:  1988        PMID: 24649523     DOI: 10.1007/bf00322438

Source DB:  PubMed          Journal:  Mol Gen Genet        ISSN: 0026-8925


  11 in total

1.  Detection of specific sequences among DNA fragments separated by gel electrophoresis.

Authors:  E M Southern
Journal:  J Mol Biol       Date:  1975-11-05       Impact factor: 5.469

2.  Localization and nucleotide sequence of the gene for the membrane polypeptide D2 from pea chloroplast DNA.

Authors:  O F Rasmussen; G Bookjans; B M Stummann; K W Henningsen
Journal:  Plant Mol Biol       Date:  1984-07       Impact factor: 4.076

3.  Paternal inheritance of chloroplast DNA in Larix.

Authors:  A E Szmidt; T Aldén; J E Hällgren
Journal:  Plant Mol Biol       Date:  1987-01       Impact factor: 4.076

Review 4.  Comparative organization of chloroplast genomes.

Authors:  J D Palmer
Journal:  Annu Rev Genet       Date:  1985       Impact factor: 16.830

5.  Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost.

Authors:  J D Palmer; W F Thompson
Journal:  Cell       Date:  1982-06       Impact factor: 41.582

6.  A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.

Authors:  A P Feinberg; B Vogelstein
Journal:  Anal Biochem       Date:  1983-07-01       Impact factor: 3.365

7.  Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.

Authors:  C Yanisch-Perron; J Vieira; J Messing
Journal:  Gene       Date:  1985       Impact factor: 3.688

8.  Chloroplast DNA polymorphisms in lodgepole and jack pines and their hybrids.

Authors:  D B Wagner; G R Furnier; M A Saghai-Maroof; S M Williams; B P Dancik; R W Allard
Journal:  Proc Natl Acad Sci U S A       Date:  1987-04       Impact factor: 11.205

9.  The complete nucleotide sequence of a 16S ribosomal RNA gene from a blue-green alga, Anacystis nidulans.

Authors:  N Tomioka; M Sugiura
Journal:  Mol Gen Genet       Date:  1983

10.  Studies on transformation of Escherichia coli with plasmids.

Authors:  D Hanahan
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

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  14 in total

1.  Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum.

Authors:  Anne-Sophie Bélanger; Jean-Simon Brouard; Patrick Charlebois; Christian Otis; Claude Lemieux; Monique Turmel
Journal:  Mol Genet Genomics       Date:  2006-08-31       Impact factor: 3.291

2.  Chloroplast DNA in Pinus monticola : 2. Survey of within-species variability and detection of heteroplasmic individuals.

Authors:  E E White
Journal:  Theor Appl Genet       Date:  1990-02       Impact factor: 5.699

3.  Chloroplast DNA in Pinus monticola : 1. Physical map.

Authors:  E E White
Journal:  Theor Appl Genet       Date:  1990-01       Impact factor: 5.699

4.  The chloroplast genome of an exsymbiotic Chlorella-like green alga.

Authors:  A M Schuster; J A Waddle; K Korth; R H Meints
Journal:  Plant Mol Biol       Date:  1990-05       Impact factor: 4.076

5.  Geographical cline of chloroplast DNA variation in Abies mariesii.

Authors:  Y Tsumura; Y Suyama; H Taguchi; K Ohba
Journal:  Theor Appl Genet       Date:  1994-12       Impact factor: 5.699

6.  Organization and nucleotide sequence of the broad bean chloroplast genes trnL-UAG, ndhF and two unidentified open reading frames.

Authors:  F Herdenberger; J H Weil; A Steinmetz
Journal:  Curr Genet       Date:  1988-12       Impact factor: 3.886

7.  The chloroplast genome of the gymnosperm Pinus contorta: a physical map and a complete collection of overlapping clones.

Authors:  J Lidholm; P Gustafsson
Journal:  Curr Genet       Date:  1991-07       Impact factor: 3.886

8.  Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16.

Authors:  J Tsudzuki; K Nakashima; T Tsudzuki; J Hiratsuka; M Shibata; T Wakasugi; M Sugiura
Journal:  Mol Gen Genet       Date:  1992-03

9.  Duplication of the psbA gene in the chloroplast genome of two Pinus species.

Authors:  J Lidholm; A Szmidt; P Gustafsson
Journal:  Mol Gen Genet       Date:  1991-05

10.  Physical map of chloroplast DNA in sugi, Cryptomeria japonica.

Authors:  Y Tsumura; Y Ogihara; T Sasakuma; K Ohba
Journal:  Theor Appl Genet       Date:  1993-04       Impact factor: 5.699

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