Literature DB >> 24646041

Gels of DNA nanostars never crystallize.

Lorenzo Rovigatti1, Frank Smallenburg, Flavio Romano, Francesco Sciortino.   

Abstract

Using state-of-the-art numerical techniques, we show that, upon lowering the temperature, tetravalent DNA nanostars form a thermodynamically stable, fully bonded equilibrium gel. In contrast to atomic and molecular network formers, in which the disordered liquid is always metastable with respect to some crystalline phase, we find that the DNA nanostar gel has a lower free energy than the diamond crystal structure in a wide range of concentrations. This unconventional behavior, here verified for the first time in a realistic model, arises from the large arm flexibility of the DNA nanostars, a property that can be tuned by design. Our results confirm the thermodynamic stability of the recently experimentally realized DNA hydrogels.

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Year:  2014        PMID: 24646041     DOI: 10.1021/nn501138w

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  11 in total

1.  Coarse-Grained Simulations of DNA Reveal Angular Dependence of Sticky-End Binding.

Authors:  Nicholas M Gravina; James C Gumbart; Harold D Kim
Journal:  J Phys Chem B       Date:  2021-04-19       Impact factor: 2.991

2.  Increasing valence pushes DNA nanostar networks to the isostatic point.

Authors:  Nathaniel Conrad; Tynan Kennedy; Deborah K Fygenson; Omar A Saleh
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-26       Impact factor: 11.205

3.  Enzymatic degradation of liquid droplets of DNA is modulated near the phase boundary.

Authors:  Omar A Saleh; Byoung-Jin Jeon; Tim Liedl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-29       Impact factor: 11.205

4.  How to simulate patchy particles.

Authors:  Lorenzo Rovigatti; John Russo; Flavio Romano
Journal:  Eur Phys J E Soft Matter       Date:  2018-05-14       Impact factor: 1.890

5.  Coarse-grained simulation of DNA using LAMMPS : An implementation of the oxDNA model and its applications.

Authors:  Oliver Henrich; Yair Augusto Gutiérrez Fosado; Tine Curk; Thomas E Ouldridge
Journal:  Eur Phys J E Soft Matter       Date:  2018-05-10       Impact factor: 1.890

6.  DNA cytoskeleton for stabilizing artificial cells.

Authors:  Chikako Kurokawa; Kei Fujiwara; Masamune Morita; Ibuki Kawamata; Yui Kawagishi; Atsushi Sakai; Yoshihiro Murayama; Shin-Ichiro M Nomura; Satoshi Murata; Masahiro Takinoue; Miho Yanagisawa
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

7.  Solution properties of star polyelectrolytes having a moderate number of arms.

Authors:  Alexandros Chremos; Jack F Douglas
Journal:  J Chem Phys       Date:  2017-07-28       Impact factor: 3.488

8.  Leveraging Hierarchical Self-Assembly Pathways for Realizing Colloidal Photonic Crystals.

Authors:  Abhishek B Rao; James Shaw; Andreas Neophytou; Daniel Morphew; Francesco Sciortino; Roy L Johnston; Dwaipayan Chakrabarti
Journal:  ACS Nano       Date:  2020-05-06       Impact factor: 15.881

9.  The Proof Is in the Pidan: Generalizing Proteins as Patchy Particles.

Authors:  Jing Cai; Alison M Sweeney
Journal:  ACS Cent Sci       Date:  2018-06-28       Impact factor: 14.553

10.  Microrheology of DNA hydrogels.

Authors:  Zhongyang Xing; Alessio Caciagli; Tianyang Cao; Iliya Stoev; Mykolas Zupkauskas; Thomas O'Neill; Tobias Wenzel; Robin Lamboll; Dongsheng Liu; Erika Eiser
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-25       Impact factor: 11.205

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