Literature DB >> 24643569

Genomic DNA library preparation for resistance gene enrichment and sequencing (RenSeq) in plants.

Florian Jupe1, Xinwei Chen, Walter Verweij, Kamel Witek, Jonathan D G Jones, Ingo Hein.   

Abstract

Enrichment of genomic DNA for genes of interest prior to high-throughput sequencing offers an efficient and cost-effective approach to reduce genome complexity. Target enrichment typically yields higher read-depth for selected genes and is therefore suitable for determination of sequence polymorphisms and enables multiplexing of samples. Target enrichment also provides a means to annotate specific gene families within the sequenced organisms without the requirements for gene models. Here we describe enrichment procedures for NB-LRR-type plant resistance genes that can, for example, be used to establish the NB-LRR gene complements of individual plants and to map resistances more rapidly using a bulked segregant analysis.

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Year:  2014        PMID: 24643569     DOI: 10.1007/978-1-62703-986-4_22

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

1.  Nuclear Transcriptomes at High Resolution Using Retooled INTACT.

Authors:  Mauricio A Reynoso; Germain C Pauluzzi; Kaisa Kajala; Sean Cabanlit; Joel Velasco; Jérémie Bazin; Roger Deal; Neelima R Sinha; Siobhan M Brady; Julia Bailey-Serres
Journal:  Plant Physiol       Date:  2017-09-27       Impact factor: 8.340

Review 2.  Genetic Engineering for Disease Resistance in Plants: Recent Progress and Future Perspectives.

Authors:  Oliver Xiaoou Dong; Pamela C Ronald
Journal:  Plant Physiol       Date:  2019-03-13       Impact factor: 8.340

3.  Evaluation of nine statistics to identify QTLs in bulk segregant analysis using next generation sequencing approaches.

Authors:  Carla de la Fuente Cantó; Yves Vigouroux
Journal:  BMC Genomics       Date:  2022-07-06       Impact factor: 4.547

4.  Optimization of immune receptor-related hypersensitive cell death response assay using agrobacterium-mediated transient expression in tobacco plants.

Authors:  Sung Un Huh
Journal:  Plant Methods       Date:  2022-05-02       Impact factor: 5.827

5.  NLR diversity and candidate fusiform rust resistance genes in loblolly pine.

Authors:  Daniel Ence; Katherine E Smith; Shenghua Fan; Leandro Gomide Neves; Robin Paul; Jill Wegrzyn; Gary F Peter; Matias Kirst; Jeremy Brawner; C Dana Nelson; John M Davis
Journal:  G3 (Bethesda)       Date:  2022-02-04       Impact factor: 3.542

6.  Utilizing "Omic" Technologies to Identify and Prioritize Novel Sources of Resistance to the Oomycete Pathogen Phytophthora infestans in Potato Germplasm Collections.

Authors:  Pauline S M Van Weymers; Katie Baker; Xinwei Chen; Brian Harrower; David E L Cooke; Eleanor M Gilroy; Paul R J Birch; Gaëtan J A Thilliez; Alison K Lees; James S Lynott; Miles R Armstrong; Gaynor McKenzie; Glenn J Bryan; Ingo Hein
Journal:  Front Plant Sci       Date:  2016-05-27       Impact factor: 5.753

7.  Disease Resistance Genetics and Genomics in Octoploid Strawberry.

Authors:  Christopher R Barbey; Seonghee Lee; Sujeet Verma; Kevin A Bird; Alan E Yocca; Patrick P Edger; Steven J Knapp; Vance M Whitaker; Kevin M Folta
Journal:  G3 (Bethesda)       Date:  2019-10-07       Impact factor: 3.154

Review 8.  Opportunities and Challenges in Studies of Host-Pathogen Interactions and Management of Verticillium dahliae in Tomatoes.

Authors:  Bhupendra Acharya; Thomas W Ingram; YeonYee Oh; Tika B Adhikari; Ralph A Dean; Frank J Louws
Journal:  Plants (Basel)       Date:  2020-11-22

Review 9.  Targeted plant improvement through genome editing: from laboratory to field.

Authors:  Dragana Miladinovic; Dulce Antunes; Kubilay Yildirim; Allah Bakhsh; Sandra Cvejić; Ankica Kondić-Špika; Ana Marjanovic Jeromela; Hilde-Gunn Opsahl-Sorteberg; Antonios Zambounis; Zoe Hilioti
Journal:  Plant Cell Rep       Date:  2021-01-21       Impact factor: 4.570

  9 in total

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