Literature DB >> 24639541

Testing the validity of ensemble descriptions of intrinsically disordered proteins.

Malene Ringkjøbing Jensen1, Martin Blackledge.   

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Year:  2014        PMID： 24639541      PMCID： PMC4000822          DOI： 10.1073/pnas.1323876111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  5 in total

Review 1.  Atomic-level characterization of disordered protein ensembles.

Authors:  Tanja Mittag; Julie D Forman-Kay
Journal:  Curr Opin Struct Biol       Date:  2007-01-23       Impact factor: 6.809

2.  Multiscaled exploration of coupled folding and binding of an intrinsically disordered molecular recognition element in measles virus nucleoprotein.

Authors:  Yong Wang; Xiakun Chu; Sonia Longhi; Philippe Roche; Wei Han; Erkang Wang; Jin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

Review 3.  Unstructural biology coming of age.

Authors:  Peter Tompa
Journal:  Curr Opin Struct Biol       Date:  2011-04-21       Impact factor: 6.809

4.  Intrinsic disorder in measles virus nucleocapsids.

Authors:  Malene Ringkjøbing Jensen; Guillaume Communie; Euripedes Almeida Ribeiro; Nicolas Martinez; Ambroise Desfosses; Loïc Salmon; Luca Mollica; Frank Gabel; Marc Jamin; Sonia Longhi; Rob W H Ruigrok; Martin Blackledge
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-25       Impact factor: 11.205

5.  Mapping the potential energy landscape of intrinsically disordered proteins at amino acid resolution.

Authors:  Valéry Ozenne; Robert Schneider; Mingxi Yao; Jie-rong Huang; Loïc Salmon; Markus Zweckstetter; Malene Ringkjøbing Jensen; Martin Blackledge
Journal:  J Am Chem Soc       Date:  2012-08-28       Impact factor: 15.419
  5 in total
  10 in total

1.  Reply to Jensen and Blackledge: Dual quantifications of intrinsically disordered proteins by NMR ensembles and molecular dynamics simulations.

Authors:  Yong Wang; Sonia Longhi; Philippe Roche; Jin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-22       Impact factor: 11.205

Review 2.  Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics.

Authors:  Tatiana Maximova; Ryan Moffatt; Buyong Ma; Ruth Nussinov; Amarda Shehu
Journal:  PLoS Comput Biol       Date:  2016-04-28       Impact factor: 4.475

3.  CHARMM36m: an improved force field for folded and intrinsically disordered proteins.

Authors:  Jing Huang; Sarah Rauscher; Grzegorz Nawrocki; Ting Ran; Michael Feig; Bert L de Groot; Helmut Grubmüller; Alexander D MacKerell
Journal:  Nat Methods       Date:  2016-11-07       Impact factor: 28.547

Review 4.  Relating sequence encoded information to form and function of intrinsically disordered proteins.

Authors:  Rahul K Das; Kiersten M Ruff; Rohit V Pappu
Journal:  Curr Opin Struct Biol       Date:  2015-04-02       Impact factor: 6.809

5.  Deconvoluting Protein (Un)folding Structural Ensembles Using X-Ray Scattering, Nuclear Magnetic Resonance Spectroscopy and Molecular Dynamics Simulation.

Authors:  Alexandr Nasedkin; Moreno Marcellini; Tomasz L Religa; Stefan M Freund; Andreas Menzel; Alan R Fersht; Per Jemth; David van der Spoel; Jan Davidsson
Journal:  PLoS One       Date:  2015-05-06       Impact factor: 3.240

6.  Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering.

Authors:  Giancarlo Tria; Haydyn D T Mertens; Michael Kachala; Dmitri I Svergun
Journal:  IUCrJ       Date:  2015-02-26       Impact factor: 4.769

7.  Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours.

Authors:  John M Jumper; Nabil F Faruk; Karl F Freed; Tobin R Sosnick
Journal:  PLoS Comput Biol       Date:  2018-12-27       Impact factor: 4.475

8.  Frustration in Fuzzy Protein Complexes Leads to Interaction Versatility.

Authors:  Maria I Freiberger; Peter G Wolynes; Diego U Ferreiro; Monika Fuxreiter
Journal:  J Phys Chem B       Date:  2021-03-05       Impact factor: 2.991

Review 9.  NMR Provides Unique Insight into the Functional Dynamics and Interactions of Intrinsically Disordered Proteins.

Authors:  Aldo R Camacho-Zarco; Vincent Schnapka; Serafima Guseva; Anton Abyzov; Wiktor Adamski; Sigrid Milles; Malene Ringkjøbing Jensen; Lukas Zidek; Nicola Salvi; Martin Blackledge
Journal:  Chem Rev       Date:  2022-04-21       Impact factor: 72.087

Review 10.  Binding Mechanisms of Intrinsically Disordered Proteins: Theory, Simulation, and Experiment.

Authors:  Luca Mollica; Luiza M Bessa; Xavier Hanoulle; Malene Ringkjøbing Jensen; Martin Blackledge; Robert Schneider
Journal:  Front Mol Biosci       Date:  2016-09-09
  10 in total

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