Literature DB >> 24637768

Expression, purification and crystallization of a dye-decolourizing peroxidase from Dictyostelium discoideum.

Amrita Rai1, Roman Fedorov1, Dietmar J Manstein1.   

Abstract

Dye-decolourizing peroxidases are haem-containing peroxidases with broad substrate specificity. Using H2O2 as an electron acceptor, they efficiently decolourize various dyes that are of industrial and environmental relevance, such as anthraquninone- and azo-based dyes. In this study, the dye-decolourizing peroxidase DdDyP from Dictyostelium discoideum was overexpressed in Escherichia coli strain Rosetta(DE3)pLysS, purified and crystallized using the vapour-diffusion method. A native crystal diffracted to 1.65 Å resolution and belonged to space group P4(1)2(1)2, with unit-cell parameters a = b = 141.03, c = 95.56 Å, α = β = γ = 90°. The asymmetric unit contains two molecules.

Entities:  

Keywords:  Dictoystelium discoideum; dye-decolourizing peroxidases; haem-binding protein

Mesh:

Substances:

Year:  2014        PMID: 24637768      PMCID: PMC3936452          DOI: 10.1107/S2053230X14000545

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  18 in total

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Journal:  Appl Environ Microbiol       Date:  1999-03       Impact factor: 4.792

2.  Complete decolorization of the anthraquinone dye Reactive blue 5 by the concerted action of two peroxidases from Thanatephorus cucumeris Dec 1.

Authors:  Yasushi Sugano; Yuko Matsushima; Makoto Shoda
Journal:  Appl Microbiol Biotechnol       Date:  2006-08-30       Impact factor: 4.813

3.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

4.  The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue.

Authors:  Toru Yoshida; Hideaki Tsuge; Hiroki Konno; Toru Hisabori; Yasushi Sugano
Journal:  FEBS J       Date:  2011-05-31       Impact factor: 5.542

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA.

Authors:  Chloe Zubieta; Rosanne Joseph; S Sri Krishna; Daniel McMullan; Mili Kapoor; Herbert L Axelrod; Mitchell D Miller; Polat Abdubek; Claire Acosta; Tamara Astakhova; Dennis Carlton; Hsiu-Ju Chiu; Thomas Clayton; Marc C Deller; Lian Duan; Ylva Elias; Marc-André Elsliger; Julie Feuerhelm; Slawomir K Grzechnik; Joanna Hale; Gye Won Han; Lukasz Jaroszewski; Kevin K Jin; Heath E Klock; Mark W Knuth; Piotr Kozbial; Abhinav Kumar; David Marciano; Andrew T Morse; Kevin D Murphy; Edward Nigoghossian; Linda Okach; Silvya Oommachen; Ron Reyes; Christopher L Rife; Paul Schimmel; Christina V Trout; Henry van den Bedem; Dana Weekes; Aprilfawn White; Qingping Xu; Keith O Hodgson; John Wooley; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Proteins       Date:  2007-11-01

7.  Molecular characterization of a novel peroxidase from the cyanobacterium Anabaena sp. strain PCC 7120.

Authors:  Henry Joseph Oduor Ogola; Takaaki Kamiike; Naoya Hashimoto; Hiroyuki Ashida; Takahiro Ishikawa; Hitoshi Shibata; Yoshihiro Sawa
Journal:  Appl Environ Microbiol       Date:  2009-10-02       Impact factor: 4.792

8.  Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1.

Authors:  Joseph N Roberts; Rahul Singh; Jason C Grigg; Michael E P Murphy; Timothy D H Bugg; Lindsay D Eltis
Journal:  Biochemistry       Date:  2011-05-19       Impact factor: 3.162

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  1 in total

1.  Structural and Biochemical Characterization of a Dye-Decolorizing Peroxidase from Dictyostelium discoideum.

Authors:  Amrita Rai; Johann P Klare; Patrick Y A Reinke; Felix Englmaier; Jörg Fohrer; Roman Fedorov; Manuel H Taft; Igor Chizhov; Ute Curth; Oliver Plettenburg; Dietmar J Manstein
Journal:  Int J Mol Sci       Date:  2021-06-10       Impact factor: 5.923

  1 in total

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