Literature DB >> 24637761

Crystallization and preliminary X-ray crystallographic studies of dipeptidyl aminopeptidase BII from Pseudoxanthomonas mexicana WO24.

Yasumitsu Sakamoto1, Yoshiyuki Suzuki2, Ippei Iizuka1, Chika Tateoka1, Saori Roppongi1, Hirofumi Okada2, Takamasa Nonaka1, Yasushi Morikawa2, Kazuo T Nakamura3, Wataru Ogasawara2, Nobutada Tanaka3.   

Abstract

Dipeptidyl aminopeptidase BII from Pseudoxanthomonas mexicana WO24 (DAP BII) is able to cleave a variety of dipeptides from the amino-terminus of substrate peptides. For crystallographic studies, DAP BII was overproduced in Escherichia coli, purified and crystallized using the hanging-drop vapour-diffusion method. X-ray diffraction data to 2.3 Å resolution were collected using an orthorhombic crystal form belonging to space group P2(1)2(1)2(1), with unit-cell parameters a = 76.55, b = 130.86, c = 170.87 Å. Structural analysis by the multi-wavelength anomalous diffraction method is in progress.

Entities:  

Keywords:  DAP BII; Pseudoxanthomonas mexicana; dipeptidyl aminopeptidase

Mesh:

Substances:

Year:  2014        PMID: 24637761      PMCID: PMC3936453          DOI: 10.1107/S2053230X13034584

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  17 in total

1.  Isoforms of dipeptidyl aminopeptidase IV from Pseudomonas sp. WO24: role of the signal sequence and overexpression in Escherichia coli.

Authors:  Wataru Ogasawara; Chiaki Tanaka; Masashi Suzuki; Go Kobayashi; Yoshiyuki Ogawa; Hirofumi Okada; Yasushi Morikawa
Journal:  Protein Expr Purif       Date:  2005-06       Impact factor: 1.650

2.  The gene encoding dipeptidyl aminopeptidase BI from Pseudomonas sp. WO24: cloning, sequencing and expression in Escherichia coli.

Authors:  W Ogasawara; G Kobayashi; S Ishimaru; H Okada; Y Morikawa
Journal:  Gene       Date:  1998-01-12       Impact factor: 3.688

3.  Dipeptidyl aminopeptidase IV from Pseudomonas sp. WO24.

Authors:  W Ogasawara; Y Ogawa; K Yano; H Okada; Y Morikawa
Journal:  Biosci Biotechnol Biochem       Date:  1996-12       Impact factor: 2.043

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Two types of novel dipeptidyl aminopeptidases from Pseudomonas sp. strain WO24.

Authors:  W Ogasawara; G Kobayashi; H Okada; Y Morikawa
Journal:  J Bacteriol       Date:  1996-11       Impact factor: 3.490

6.  Protease II from Escherichia coli: sequencing and expression of the enzyme gene and characterization of the expressed enzyme.

Authors:  A Kanatani; T Masuda; T Shimoda; F Misoka; X S Lin; T Yoshimoto; D Tsuru
Journal:  J Biochem       Date:  1991-09       Impact factor: 3.387

7.  Prolyl oligopeptidase: an unusual beta-propeller domain regulates proteolysis.

Authors:  V Fülöp; Z Böcskei; L Polgár
Journal:  Cell       Date:  1998-07-24       Impact factor: 41.582

8.  The crystal structure of dipeptidyl peptidase IV (CD26) reveals its functional regulation and enzymatic mechanism.

Authors:  Michael Engel; Torsten Hoffmann; Leona Wagner; Michael Wermann; Ulrich Heiser; Reiner Kiefersauer; Robert Huber; Wolfram Bode; Hans-Ulrich Demuth; Hans Brandstetter
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-10       Impact factor: 11.205

9.  A novel dipeptidyl aminopeptidase from Pseudomonas sp. strain WO24.

Authors:  W Ogasawara; K Ochiai; K Ando; K Yano; M Yamasaki; H Okada; Y Morikawa
Journal:  J Bacteriol       Date:  1996-03       Impact factor: 3.490

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

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  2 in total

1.  Structural and mutational analyses of dipeptidyl peptidase 11 from Porphyromonas gingivalis reveal the molecular basis for strict substrate specificity.

Authors:  Yasumitsu Sakamoto; Yoshiyuki Suzuki; Ippei Iizuka; Chika Tateoka; Saori Roppongi; Mayu Fujimoto; Koji Inaka; Hiroaki Tanaka; Mitsugu Yamada; Kazunori Ohta; Hiroaki Gouda; Takamasa Nonaka; Wataru Ogasawara; Nobutada Tanaka
Journal:  Sci Rep       Date:  2015-06-09       Impact factor: 4.379

2.  S46 peptidases are the first exopeptidases to be members of clan PA.

Authors:  Yasumitsu Sakamoto; Yoshiyuki Suzuki; Ippei Iizuka; Chika Tateoka; Saori Roppongi; Mayu Fujimoto; Koji Inaka; Hiroaki Tanaka; Mika Masaki; Kazunori Ohta; Hirofumi Okada; Takamasa Nonaka; Yasushi Morikawa; Kazuo T Nakamura; Wataru Ogasawara; Nobutada Tanaka
Journal:  Sci Rep       Date:  2014-05-15       Impact factor: 4.379

  2 in total

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