Literature DB >> 24637751

Preparation of crystals for characterizing the Grb7 SH2 domain before and after complex formation with a bicyclic peptide antagonist.

Nigus D Ambaye1, Menachem J Gunzburg1, Daouda A K Traore1, Mark P Del Borgo2, Patrick Perlmutter2, Matthew C J Wilce1, Jacqueline A Wilce1.   

Abstract

Human growth factor receptor-bound protein 7 (Grb7) is an adapter protein involved in cell growth, migration and proliferation. It is now recognized that Grb7 is an emerging therapeutic target in specific cancer subtypes. Recently, the discovery of a bicyclic peptide inhibitor that targets the Grb7 SH2 domain, named G7-B1, was reported. In an attempt to probe the foundation of its interaction with Grb7, the crystallization and preliminary data collection of both the apo and G7-B1-bound forms of the Grb7 SH2 domain are reported here. Diffraction-quality crystals were obtained using the hanging-drop vapour-diffusion method. After several rounds of microseeding, crystals of the apo Grb7 SH2 domain were obtained that diffracted to 1.8 Å resolution, while those of the G7-B1-Grb7 SH2 domain complex diffracted to 2.2 Å resolution. The apo Grb7 SH2 domain crystallized in the trigonal space group P63, whereas the G7-B1-Grb7 SH2 domain complex crystallized in the monoclinic space group P21. The experimental aspects of crystallization, crystal optimization and data collection and the preliminary data are reported.

Entities:  

Keywords:  Grb7; SH2 domain; seeding

Mesh:

Substances:

Year:  2014        PMID: 24637751      PMCID: PMC3936443          DOI: 10.1107/S2053230X13033414

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  28 in total

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3.  Solvent content of protein crystals.

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4.  Solution structure of the human Grb7-SH2 domain/erbB2 peptide complex and structural basis for Grb7 binding to ErbB2.

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5.  Coamplification and coexpression of GRB7 and ERBB2 is found in high grade intraepithelial neoplasia and in invasive Barrett's carcinoma.

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Journal:  Int J Cancer       Date:  2004-12-10       Impact factor: 7.396

6.  Growth factor receptor-bound protein-7 (Grb7) as a prognostic marker and therapeutic target in breast cancer.

Authors:  Y Nadler; A M González; R L Camp; D L Rimm; H M Kluger; Y Kluger
Journal:  Ann Oncol       Date:  2009-08-28       Impact factor: 32.976

7.  Dissecting GRB7-mediated signals for proliferation and migration in HER2 overexpressing breast tumor cells: GTP-ase rules.

Authors:  De Pradip; Mark Bouzyk; Nandini Dey; Brian Leyland-Jones
Journal:  Am J Cancer Res       Date:  2013-04-03       Impact factor: 6.166

8.  High-efficiency expression/cloning of epidermal growth factor-receptor-binding proteins with Src homology 2 domains.

Authors:  B Margolis; O Silvennoinen; F Comoglio; C Roonprapunt; E Skolnik; A Ullrich; J Schlessinger
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-01       Impact factor: 11.205

9.  How to measure and predict the molar absorption coefficient of a protein.

Authors:  C N Pace; F Vajdos; L Fee; G Grimsley; T Gray
Journal:  Protein Sci       Date:  1995-11       Impact factor: 6.725

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
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  1 in total

1.  Unexpected involvement of staple leads to redesign of selective bicyclic peptide inhibitor of Grb7.

Authors:  Menachem J Gunzburg; Ketav Kulkarni; Gabrielle M Watson; Nigus D Ambaye; Mark P Del Borgo; Rebecca Brandt; Stephanie C Pero; Patrick Perlmutter; Matthew C J Wilce; Jacqueline A Wilce
Journal:  Sci Rep       Date:  2016-06-03       Impact factor: 4.379

  1 in total

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