Literature DB >> 24637398

The timing of pre-mRNA splicing visualized in real-time.

Maria Carmo-Fonseca1, Tomas Kirchhausen2.   

Abstract

Since it became clear that intervening sequences or introns are spliced out from precursor pre-mRNA molecules in the nucleus before mature mRNAs are exported to the cytoplasm, questions were raised about the timing of splicing. Does splicing start while RNA polymerase II is still transcribing? Is splicing a slow or a fast process? Is timing important to control the splicing reaction? Although our understanding on the mechanism and function of splicing is largely based on data obtained using biochemical and large-scale "omic" approaches, microscopy has been instrumental to address questions related to timing. Experiments done with the electron microscope paved the way to the discovery of splicing and provided unequivocal evidence that splicing can occur co-transcriptionally. More recently, live-cell microscopy introduced a technical breakthrough that allows real-time visualization of splicing dynamics. We discuss here some of the microscopy advances that provided the basis for the current conceptual view of the splicing process and we outline a most recent development that permits direct measurement, in living cells, of the time it takes to synthesize and excise an intron from individual pre-mRNA molecules.

Keywords:  RNA; lifetime; live-cell imaging; single-molecule visualization; splicing; transcription

Mesh:

Substances:

Year:  2014        PMID: 24637398      PMCID: PMC4028348          DOI: 10.4161/nucl.28056

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  34 in total

1.  High mobility of proteins in the mammalian cell nucleus.

Authors:  R D Phair; T Misteli
Journal:  Nature       Date:  2000-04-06       Impact factor: 49.962

2.  In vivo kinetics of mRNA splicing and transport in mammalian cells.

Authors:  A Audibert; D Weil; F Dautry
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

3.  Dynamics of single mRNPs in nuclei of living cells.

Authors:  Yaron Shav-Tal; Xavier Darzacq; Shailesh M Shenoy; Dahlene Fusco; Susan M Janicki; David L Spector; Robert H Singer
Journal:  Science       Date:  2004-06-18       Impact factor: 47.728

4.  Spliceosome assembly is coupled to RNA polymerase II dynamics at the 3' end of human genes.

Authors:  Sandra Bento Martins; José Rino; Teresa Carvalho; Célia Carvalho; Minoru Yoshida; Jasmim Mona Klose; Sérgio Fernandes de Almeida; Maria Carmo-Fonseca
Journal:  Nat Struct Mol Biol       Date:  2011-09-04       Impact factor: 15.369

5.  Visualization of nucleolar genes.

Authors:  O L Miller; B R Beatty
Journal:  Science       Date:  1969-05-23       Impact factor: 47.728

6.  RNA-DNA hybrids at the cytological level.

Authors:  H A John; M L Birnstiel; K W Jones
Journal:  Nature       Date:  1969-08-09       Impact factor: 49.962

7.  Single-molecule imaging of transcriptionally coupled and uncoupled splicing.

Authors:  Diana Y Vargas; Khyati Shah; Mona Batish; Michael Levandoski; Sourav Sinha; Salvatore A E Marras; Paul Schedl; Sanjay Tyagi
Journal:  Cell       Date:  2011-11-23       Impact factor: 41.582

8.  From silencing to gene expression: real-time analysis in single cells.

Authors:  Susan M Janicki; Toshiro Tsukamoto; Simone E Salghetti; William P Tansey; Ravi Sachidanandam; Kannanganattu V Prasanth; Thomas Ried; Yaron Shav-Tal; Edouard Bertrand; Robert H Singer; David L Spector
Journal:  Cell       Date:  2004-03-05       Impact factor: 41.582

9.  Live-cell visualization of pre-mRNA splicing with single-molecule sensitivity.

Authors:  Robert M Martin; José Rino; Célia Carvalho; Tomas Kirchhausen; Maria Carmo-Fonseca
Journal:  Cell Rep       Date:  2013-09-12       Impact factor: 9.423

Review 10.  Cell biology of transcription and pre-mRNA splicing: nuclear architecture meets nuclear function.

Authors:  T Misteli
Journal:  J Cell Sci       Date:  2000-06       Impact factor: 5.285

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  7 in total

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Authors:  Songhee H Kim; Melissa Vieira; Jae Youn Shim; Hongyoung Choi; Hye Yoon Park
Journal:  RNA Biol       Date:  2018-11-14       Impact factor: 4.652

2.  Global donor and acceptor splicing site kinetics in human cells.

Authors:  Leonhard Wachutka; Livia Caizzi; Julien Gagneur; Patrick Cramer
Journal:  Elife       Date:  2019-04-26       Impact factor: 8.140

3.  Spatial organization of transcribed eukaryotic genes.

Authors:  Johannes Ribisel; Simon Ullrich; Susanne Leidescher; Yana Feodorova; Erica Hildebrand; Alexandra Galitsyna; Sebastian Bultmann; Stephanie Link; Katharina Thanisch; Christopher Mulholland; Job Dekker; Heinrich Leonhardt; Leonid Mirny; Irina Solovei
Journal:  Nat Cell Biol       Date:  2022-02-17       Impact factor: 28.213

4.  Antisense Oligonucleotide-Based Rescue of Aberrant Splicing Defects Caused by 15 Pathogenic Variants in ABCA4.

Authors:  Tomasz Z Tomkiewicz; Nuria Suárez-Herrera; Frans P M Cremers; Rob W J Collin; Alejandro Garanto
Journal:  Int J Mol Sci       Date:  2021-04-28       Impact factor: 5.923

5.  A Computational Analysis of Alternative Splicing across Mammalian Tissues Reveals Circadian and Ultradian Rhythms in Splicing Events.

Authors:  Rukeia El-Athman; Dora Knezevic; Luise Fuhr; Angela Relógio
Journal:  Int J Mol Sci       Date:  2019-08-15       Impact factor: 5.923

6.  Inferring gene regulation from stochastic transcriptional variation across single cells at steady state.

Authors:  Anika Gupta; Jorge D Martin-Rufino; Thouis R Jones; Vidya Subramanian; Xiaojie Qiu; Emanuelle I Grody; Alex Bloemendal; Chen Weng; Sheng-Yong Niu; Kyung Hoi Min; Arnav Mehta; Kaite Zhang; Layla Siraj; Aziz Al' Khafaji; Vijay G Sankaran; Soumya Raychaudhuri; Brian Cleary; Sharon Grossman; Eric S Lander
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-15       Impact factor: 12.779

Review 7.  RNA modifications in brain tumorigenesis.

Authors:  Albert Z Huang; Alberto Delaidelli; Poul H Sorensen
Journal:  Acta Neuropathol Commun       Date:  2020-05-06       Impact factor: 7.801

  7 in total

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