Literature DB >> 24633650

Contributions from emerging transcriptomics technologies and computational strategies for drug discovery.

Onat Kadioglu1, Thomas Efferth.   

Abstract

Drug discovery involves various steps and is a long process being even more demanding for complex diseases such as cancer. Tumors are ensembles of subpopulations with different mutations, require very specific and effective strategies. Conventional drug screening technologies may not be adequate and efficient anymore. Drug repositioning is a useful strategy to identify new uses for previously failed drugs. High throughput and deep sequencing technologies provide valuable support by yielding enormous amounts of "-omics" data and contribute to understanding the molecular mechanisms responsible for drug action. Computational methods coupled with systems biology represent a promising step to interpret pharmacogenomic data and establish strong connections with drug discovery. Genomic variations have been found to be linked with differential drug response among individuals. Large genome wide association studies are necessary to identify reliable connections between genomic variations and drug response since personalized medicine has been accepted as an important phenomenon in the drug discovery and development process post approval.

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Mesh:

Year:  2014        PMID: 24633650     DOI: 10.1007/s10637-014-0081-x

Source DB:  PubMed          Journal:  Invest New Drugs        ISSN: 0167-6997            Impact factor:   3.850


  23 in total

Review 1.  Next-generation genomics: an integrative approach.

Authors:  R David Hawkins; Gary C Hon; Bing Ren
Journal:  Nat Rev Genet       Date:  2010-07       Impact factor: 53.242

Review 2.  Network biology: understanding the cell's functional organization.

Authors:  Albert-László Barabási; Zoltán N Oltvai
Journal:  Nat Rev Genet       Date:  2004-02       Impact factor: 53.242

3.  2011 FDA drug approvals.

Authors:  Asher Mullard
Journal:  Nat Rev Drug Discov       Date:  2012-02-01       Impact factor: 84.694

4.  A co-module approach for elucidating drug-disease associations and revealing their molecular basis.

Authors:  Shiwen Zhao; Shao Li
Journal:  Bioinformatics       Date:  2012-01-28       Impact factor: 6.937

Review 5.  Computational tools for prioritizing candidate genes: boosting disease gene discovery.

Authors:  Yves Moreau; Léon-Charles Tranchevent
Journal:  Nat Rev Genet       Date:  2012-07-03       Impact factor: 53.242

Review 6.  Genomic medicine--an updated primer.

Authors:  W Gregory Feero; Alan E Guttmacher; Francis S Collins
Journal:  N Engl J Med       Date:  2010-05-27       Impact factor: 91.245

Review 7.  Network medicine: a network-based approach to human disease.

Authors:  Albert-László Barabási; Natali Gulbahce; Joseph Loscalzo
Journal:  Nat Rev Genet       Date:  2011-01       Impact factor: 53.242

8.  Deleterious- and disease-allele prevalence in healthy individuals: insights from current predictions, mutation databases, and population-scale resequencing.

Authors:  Yali Xue; Yuan Chen; Qasim Ayub; Ni Huang; Edward V Ball; Matthew Mort; Andrew D Phillips; Katy Shaw; Peter D Stenson; David N Cooper; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2012-12-07       Impact factor: 11.025

9.  DRAR-CPI: a server for identifying drug repositioning potential and adverse drug reactions via the chemical-protein interactome.

Authors:  Heng Luo; Jian Chen; Leming Shi; Mike Mikailov; Huang Zhu; Kejian Wang; Lin He; Lun Yang
Journal:  Nucleic Acids Res       Date:  2011-05-10       Impact factor: 16.971

10.  An integrated encyclopedia of DNA elements in the human genome.

Authors: 
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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  3 in total

1.  Multifactorial Modes of Action of Arsenic Trioxide in Cancer Cells as Analyzed by Classical and Network Pharmacology.

Authors:  Mona Dawood; Sami Hamdoun; Thomas Efferth
Journal:  Front Pharmacol       Date:  2018-02-27       Impact factor: 5.810

2.  Drug repurposing using transcriptome sequencing and virtual drug screening in a patient with glioblastoma.

Authors:  Mohamed E M Saeed; Onat Kadioglu; Henry Johannes Greten; Adem Yildirim; Katharina Mayr; Frederik Wenz; Frank A Giordano; Thomas Efferth
Journal:  Invest New Drugs       Date:  2020-12-12       Impact factor: 3.850

3.  Drug repurposing: a systematic review on root causes, barriers and facilitators.

Authors:  Nithya Krishnamurthy; Alyssa A Grimshaw; Sydney A Axson; Sung Hee Choe; Jennifer E Miller
Journal:  BMC Health Serv Res       Date:  2022-07-29       Impact factor: 2.908

  3 in total

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