Literature DB >> 24631869

Hitting the 'mark': interpreting lysine methylation in the context of active transcription.

Glenn G Wozniak1, Brian D Strahl2.   

Abstract

Histones and their posttranslational modifications (PTMs) play an important role in regulating DNA-templated processes. While some PTMs directly modulate chromatin architecture via charge effects, others rely on the action of reader or effector proteins that can recognize and bind the modification to fulfill distinct cellular outcomes. One PTM that has been well studied with regard to reader proteins is histone lysine methylation - a PTM linked to many DNA-templated processes including transcription, DNA replication and DNA repair. In this review, we summarize the current understanding of how histone lysine methylation is read during the process of active transcription. We also describe how the interpretation of lysine methylation fits into a larger, more complex 'code' of histone PTMs to modulate chromatin structure and function. These insights take into account emerging concepts in the field in an effort to help facilitate future studies.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Chromatin; Gene transcription; Histones; Lysine methylation; Post-translational modifications; RNA polymerase II

Mesh:

Substances:

Year:  2014        PMID: 24631869     DOI: 10.1016/j.bbagrm.2014.03.002

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  35 in total

1.  Transition state for the NSD2-catalyzed methylation of histone H3 lysine 36.

Authors:  Myles B Poulin; Jessica L Schneck; Rosalie E Matico; Patrick J McDevitt; Michael J Huddleston; Wangfang Hou; Neil W Johnson; Sara H Thrall; Thomas D Meek; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

Review 2.  Histone methyltransferases: novel targets for tumor and developmental defects.

Authors:  Xin Yi; Xue-Jun Jiang; Xiao-Yan Li; Ding-Sheng Jiang
Journal:  Am J Transl Res       Date:  2015-11-15       Impact factor: 4.060

3.  Identification of Rpl29 as a major substrate of the lysine methyltransferase Set7/9.

Authors:  Tewfik Hamidi; Anup Kumar Singh; Nicolas Veland; Vidyasiri Vemulapalli; Jianji Chen; Swanand Hardikar; Jianqiang Bao; Christopher J Fry; Vicky Yang; Kimberly A Lee; Ailan Guo; Cheryl H Arrowsmith; Mark T Bedford; Taiping Chen
Journal:  J Biol Chem       Date:  2018-06-29       Impact factor: 5.157

4.  Developing Spindlin1 small-molecule inhibitors by using protein microarrays.

Authors:  Narkhyun Bae; Monica Viviano; Xiaonan Su; Jie Lv; Donghang Cheng; Cari Sagum; Sabrina Castellano; Xue Bai; Claire Johnson; Mahmoud Ibrahim Khalil; Jianjun Shen; Kaifu Chen; Haitao Li; Gianluca Sbardella; Mark T Bedford
Journal:  Nat Chem Biol       Date:  2017-05-15       Impact factor: 15.040

Review 5.  Advanced methods for the analysis of chromatin-associated proteins.

Authors:  Hector Guillen-Ahlers; Michael R Shortreed; Lloyd M Smith; Michael Olivier
Journal:  Physiol Genomics       Date:  2014-05-06       Impact factor: 3.107

6.  The timing is right.

Authors:  R Magnus N Friis; Michael C Schultz
Journal:  Nat Struct Mol Biol       Date:  2014-10       Impact factor: 15.369

7.  IUGR prevents IGF-1 upregulation in juvenile male mice by perturbing postnatal IGF-1 chromatin remodeling.

Authors:  Camille M Fung; Yueqin Yang; Qi Fu; Ashley S Brown; Baifeng Yu; Christopher W Callaway; Jicheng Li; Robert H Lane; Robert A McKnight
Journal:  Pediatr Res       Date:  2015-03-31       Impact factor: 3.756

8.  Chromatin condensation and recruitment of PHD finger proteins to histone H3K4me3 are mutually exclusive.

Authors:  Jovylyn Gatchalian; Carmen Mora Gallardo; Stephen A Shinsky; Ruben Rosas Ospina; Andrea Mansilla Liendo; Krzysztof Krajewski; Brianna J Klein; Forest H Andrews; Brian D Strahl; Karel H M van Wely; Tatiana G Kutateladze
Journal:  Nucleic Acids Res       Date:  2016-03-25       Impact factor: 16.971

Review 9.  PWWP domains and their modes of sensing DNA and histone methylated lysines.

Authors:  Germana B Rona; Elis C A Eleutherio; Anderson S Pinheiro
Journal:  Biophys Rev       Date:  2016-01-14

10.  Structural Insight into Recognition of Methylated Histone H3K4 by Set3.

Authors:  Jovylyn Gatchalian; Muzaffar Ali; Forest H Andrews; Yi Zhang; Alexander S Barrett; Tatiana G Kutateladze
Journal:  J Mol Biol       Date:  2016-09-30       Impact factor: 5.469

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