Literature DB >> 24631844

The contribution of genetic and genomic approaches to plant domestication studies.

Paul Gepts1.   

Abstract

The application of genomic approaches to the phenomenon of plant domestication promises a better understanding of the origins of agriculture, but also of the way plant genomes in general are organized and expressed. Building on earlier genetic research, more detailed information has become available on the organization of genetic diversity at the genome level and the effects of gene flow on diversity in different regions of the genome. In addition, putative domestication genes have been identified through population genomics approaches (selective sweeps or divergence scanning). Further information has been obtained on the origin of domestication syndrome mutations and the dispersal and adaptation of crops after domestication. For the future, increasingly multidisciplinary approaches using combinations of genomics and other approaches will prevail.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24631844     DOI: 10.1016/j.pbi.2014.02.001

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  23 in total

1.  Tracing back the origin of pumpkins (Cucurbita pepo ssp. pepo L.) in Mexico.

Authors:  Gabriela Castellanos-Morales; Karen Y Ruiz-Mondragón; Helena S Hernández-Rosales; Guillermo Sánchez-de la Vega; Niza Gámez; Erika Aguirre-Planter; Salvador Montes-Hernández; Rafael Lira-Saade; Luis E Eguiarte
Journal:  Proc Biol Sci       Date:  2019-08-14       Impact factor: 5.349

2.  Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea.

Authors:  Feng Cheng; Rifei Sun; Xilin Hou; Hongkun Zheng; Fenglan Zhang; Yangyong Zhang; Bo Liu; Jianli Liang; Mu Zhuang; Yunxia Liu; Dongyuan Liu; Xiaobo Wang; Pingxia Li; Yumei Liu; Ke Lin; Johan Bucher; Ningwen Zhang; Yan Wang; Hui Wang; Jie Deng; Yongcui Liao; Keyun Wei; Xueming Zhang; Lixia Fu; Yunyan Hu; Jisheng Liu; Chengcheng Cai; Shujiang Zhang; Shifan Zhang; Fei Li; Hui Zhang; Jifang Zhang; Ning Guo; Zhiyuan Liu; Jin Liu; Chao Sun; Yuan Ma; Haijiao Zhang; Yang Cui; Micheal R Freeling; Theo Borm; Guusje Bonnema; Jian Wu; Xiaowu Wang
Journal:  Nat Genet       Date:  2016-08-15       Impact factor: 38.330

3.  SNP discovery in common bean by restriction-associated DNA (RAD) sequencing for genetic diversity and population structure analysis.

Authors:  Paula Arielle M R Valdisser; Georgios J Pappas; Ivandilson P P de Menezes; Bárbara S F Müller; Wendell J Pereira; Marcelo G Narciso; Claudio Brondani; Thiago L P O Souza; Tereza C O Borba; Rosana P Vianello
Journal:  Mol Genet Genomics       Date:  2016-03-01       Impact factor: 3.291

Review 4.  Back to the Origins: Background and Perspectives of Grapevine Domestication.

Authors:  Fabrizio Grassi; Gabriella De Lorenzis
Journal:  Int J Mol Sci       Date:  2021-04-26       Impact factor: 5.923

5.  Using precision phenotyping to inform de novo domestication.

Authors:  Alisdair R Fernie; Saleh Alseekh; Jie Liu; Jianbing Yan
Journal:  Plant Physiol       Date:  2021-07-06       Impact factor: 8.340

6.  Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars.

Authors:  Hongda Zou; Raanan Tzarfati; Sariel Hübner; Tamar Krugman; Tzion Fahima; Shahal Abbo; Yehoshua Saranga; Abraham B Korol
Journal:  BMC Genomics       Date:  2015-10-13       Impact factor: 3.969

7.  Characterization of a Genomic Region under Selection in Cultivated Carrot (Daucus carota subsp. sativus) Reveals a Candidate Domestication Gene.

Authors:  Alicja Macko-Podgórni; Gabriela Machaj; Katarzyna Stelmach; Douglas Senalik; Ewa Grzebelus; Massimo Iorizzo; Philipp W Simon; Dariusz Grzebelus
Journal:  Front Plant Sci       Date:  2017-01-18       Impact factor: 5.753

8.  A Gene-Oriented Haplotype Comparison Reveals Recently Selected Genomic Regions in Temperate and Tropical Maize Germplasm.

Authors:  Cheng He; Junjie Fu; Jie Zhang; Yongxiang Li; Jun Zheng; Hongwei Zhang; Xiaohong Yang; Jianhua Wang; Guoying Wang
Journal:  PLoS One       Date:  2017-01-18       Impact factor: 3.240

9.  Domesticated, Genetically Engineered, and Wild Plant Relatives Exhibit Unintended Phenotypic Differences: A Comparative Meta-Analysis Profiling Rice, Canola, Maize, Sunflower, and Pumpkin.

Authors:  Alejandra Hernández-Terán; Ana Wegier; Mariana Benítez; Rafael Lira; Ana E Escalante
Journal:  Front Plant Sci       Date:  2017-12-05       Impact factor: 5.753

10.  Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels.

Authors:  Romina Beleggia; Domenico Rau; Giovanni Laidò; Cristiano Platani; Franca Nigro; Mariagiovanna Fragasso; Pasquale De Vita; Federico Scossa; Alisdair R Fernie; Zoran Nikoloski; Roberto Papa
Journal:  Mol Biol Evol       Date:  2016-04-05       Impact factor: 16.240

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