Literature DB >> 24629192

Computational approaches and resources in single amino acid substitutions analysis toward clinical research.

C George Priya Doss1, Chiranjib Chakraborty2, Vaishnavi Narayan3, D Thirumal Kumar4.   

Abstract

Single amino acid substitutions (SAPs) belong to a class of SNPs in the coding region, which alter the protein function during the translation process. Storage of more information regarding SAPs in public databases will soon become a major hurdle in characterizing the functional SAPs. In such a demanding era, biology has to rely on bioinformatics, which can work its way through to solve the problems at hand by cutting huge amount of time and resources that are otherwise wasted. Here, we describe an overview of the existing repositories of variant databases and computational methods in predicting the effects of functional SAPs on protein stability, structure, function, drug response, and protein dynamics. This chapter will inspire many biologists with a greater promise in identifying the functional SAPs at the structural level, thereby understanding the molecular effects that are critical for personalized medicine diagnosis, prognosis, and treatment for diseases.
© 2014 Elsevier Inc. All rights reserved.

Keywords:  Deleterious; Docking; Homology modeling; Molecular dynamics; SNPs; Single amino acid substitutions

Mesh:

Year:  2014        PMID: 24629192     DOI: 10.1016/B978-0-12-800168-4.00010-X

Source DB:  PubMed          Journal:  Adv Protein Chem Struct Biol        ISSN: 1876-1623            Impact factor:   3.507


  3 in total

1.  Comparative computational assessment of the pathogenicity of mutations in the Aspartoacylase enzyme.

Authors:  C George Priya Doss; Hatem Zayed
Journal:  Metab Brain Dis       Date:  2017-09-06       Impact factor: 3.584

2.  Computational approach to unravel the impact of missense mutations of proteins (D2HGDH and IDH2) causing D-2-hydroxyglutaric aciduria 2.

Authors:  D Thirumal Kumar; L Jerushah Emerald; C George Priya Doss; P Sneha; R Siva; W Charles Emmanuel Jebaraj; Hatem Zayed
Journal:  Metab Brain Dis       Date:  2018-07-09       Impact factor: 3.655

3.  Proposing the Promiscuous Protein Structures in JNK1 and JNK3 for Virtual Screening in Pursuit of Potential Leads.

Authors:  Ananthasri Sailapathi; Gopinath Murugan; Kanagasabai Somarathinam; Seshan Gunalan; Rahul Jagadeesan; Niyaz Yoosuf; Sekar Kanagaraj; Gugan Kothandan
Journal:  ACS Omega       Date:  2020-02-21
  3 in total

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