| Literature DB >> 24626473 |
W David Hill1, Christiaan de Leeuw2, Gail Davies3, David Cherry McLachlan Liewald3, Anthony Payton4, Leone C A Craig5, Lawrence J Whalley6, Mike Horan7, William Ollier4, John M Starr3, Neil Pendleton4, Danielle Posthuma8, Timothy C Bates1, Ian J Deary1.
Abstract
Previous functional gene group analyses implicated common single nucleotide polymorphisms (SNPs) in heterotrimeric G protein coding genes as being associated with differences in human intelligence. Here, we sought to replicate this finding using five independent cohorts of older adults including current IQ and childhood IQ, and using both gene- and SNP-based analytic strategies. No significant associations were found between variation in heterotrimeric G protein genes and intelligence in any cohort at either of the two time points. These results indicate that, whereas G protein systems are important in cognition, common genetic variation in these genes is unlikely to be a substantial influence on human intelligence differences.Entities:
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Year: 2014 PMID: 24626473 PMCID: PMC3953514 DOI: 10.1371/journal.pone.0091690
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Gene based analysis results for Crystallised and fluid cognitive ability.
| Gene based P-values | |||||
| Gene name | N SNPs | Start position (bp) | Stop position (bp) | Crystallised Ability | Fluid Ability |
|
| 69 | 3045407 | 3072454 | 0.280 | 0.340 |
|
| 228 | 2734266 | 2850485 | 0.214 | 0.521 |
|
| 54 | 60437294 | 60483216 | 0.844 | 0.705 |
|
| 311 | 79228367 | 79453043 | 0.950 | 0.568 |
|
| 88 | 3087190 | 3114766 | 0.640 | 0.561 |
|
| 186 | 79602075 | 79686661 | 0.251 | 0.049 |
|
| 32 | 50248650 | 50271790 | 0.541 | 0.684 |
|
| 102 | 109892708 | 109939975 | 0.804 | 0.937 |
|
| 258 | 11679264 | 11871919 | 0.178 | 0.002 |
|
| 241 | 54782751 | 54948857 | 0.151 | 0.070 |
|
| 271 | 79525010 | 79836012 | 0.638 | 0.412 |
|
| 127 | 56848189 | 56919645 | 0.717 | 0.752 |
|
| 34 | 50204046 | 50208953 | 0.235 | 0.588 |
|
| 138 | 21742668 | 21797221 | 0.038 | 0.807 |
|
| 52 | 1706588 | 1812355 | 0.815 | 0.795 |
|
| 35 | 100109310 | 100114728 | 0.677 | 0.956 |
|
| 72 | 6819635 | 6826818 | 0.286 | 0.768 |
|
| 94 | 180596569 | 180652065 | 0.946 | 0.027 |
|
| 137 | 50200414 | 50270857 | 0.973 | 0.794 |
|
| 130 | 113463681 | 113472347 | 0.236 | 0.907 |
|
| 121 | 93388951 | 93393762 | 0.505 | 0.533 |
|
| 239 | 67939736 | 68071730 | 0.611 | 0.725 |
|
| 392 | 51396799 | 51506268 | 0.884 | 0.308 |
|
| 38 | 62231708 | 62233246 | 0.922 | 0.186 |
|
| 148 | 233777607 | 233880677 | 0.751 | 0.755 |
|
| 136 | 84736593 | 84744850 | 0.836 | 0.953 |
|
| 143 | 2462217 | 2653746 | 0.440 | 0.210 |
Note: * indicates genes without coverage in Ruano et al. [12] ** Gene GNB2 was incorporated into the GSEA analysis, but was not tested the JAG replication (Table 1).
Figure 1Simulations exploring how power fuctuates as a function of total variance explained when the effect is spread over 10 SNPs.
For each effect size (1,2,3,4,5 or 10% of the total variance) 100 simulations were carried out. The mean power from these 100 simulations is shown in red with error bars depicting ±1 standard error.
Figure 4Simulations exploring how power fuctuates as a function of total variance explained when the effect is spread over 300 SNPs.
For each effect size (1,2,3,4,5 or 10% of the total variance) 100 simulations were carried out. The mean power from these 100 simulations is shown in red with error bars depicting ±1 standard error.
Figure 5The mean power is plotted against variance explained for the number of SNPs the effect is spread over.
As indicated, the total amount of variance explained, rather than the number of SNPs the effect is spread over, influences statistical power.
Association between fluid and crystallised ability and the G protein gene set for each of the five CAGES cohorts.
| Fluid ability | Crystallised ability | |||||
| Cohort | N | N SNPs | Empirical p-Value | N | N SNPs | Empirical p-Value |
| Lothian Birth Cohort 1921 | 505 | 468 | 0.68 | 515 | 468 | 0.66 |
| Lothian Birth Cohort 1936 | 989 | 468 | 0.76 | 1003 | 468 | 0.97 |
| Aberdeen Birth Cohort 1936 | 350 | 470 | 0.62 | 420 | 470 | 0.63 |
| Newcastle | 754 | 469 | 0.18 | 750 | 469 | 0.90 |
| Manchester | 805 | 469 | 0.20 | 770 | 469 | 0.57 |