| Literature DB >> 24625887 |
Yi Li1, Yuan-Yuan Liu2, Xue-Jun Chen3, Xiao-Hui Xiong1, Fang-Shi Li3.
Abstract
A series of novel 1,4-dihydro-2,6- dimethyl-3,5-pyridinedicarboxamides were synthesized and characterized by infrared absorption spectrum (IR), proton nuclear magnetic resonance (1H NMR), elemental analysis, ultraviolet spectrum (UV), and fluorescence techniques, together with X-ray single crystal diffraction. The results of density functional theory (DFT) and time-dependent density functional theory (TDDFT) calculations provided a reasonable explanation on the molecular structures, the molecular frontier orbital, and the spectra of electronic absorption and emission. The present work will be helpful to systematically understanding of the structures and the optical properties of 1,4-dihydropyridines for studying the structure-activity relationship and to develop new drugs and their analytical methods.Entities:
Mesh:
Substances:
Year: 2014 PMID: 24625887 PMCID: PMC3953339 DOI: 10.1371/journal.pone.0091361
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Synthetic routes of compounds a–e.
Crystal data and structure refinement for a and b.
| a | b | |
| CCDC No. | 851885 | 851886 |
| empirical formula | C21H19N3O | C23H25N3O2 |
| formula weight | 345.40 | 375.46 |
| temperature [K] | 293(2) | 293(2) |
| wavelength [Å] | 0.71073 | 0.71073 |
| crystal system, | Orthorhombic | Orthorhombic |
| space group |
|
|
| unit cell dimensions | ||
|
| 23.278(5) | 8.5660(17) |
|
| 8.3400(17) | 21.824(4) |
|
| 9.4260(19) | 22.631(5) |
|
| 90.00 | 90.00 |
|
| 90.00 | 90.00 |
|
| 90.00 | 90.00 |
| volume [Å3] | 1829.9(6) | 4230.7(15) |
|
| 4 | 8 |
|
| 1.254 | 1.179 |
| μ [mm−1] | 0.075 | 0.076 |
|
| 728 | 1600 |
| crystal size [mm3] | 0.10 × 0.20 × 0.30 | 0.10 × 0.10 × 0.20 |
|
| 1.75 to 25.37 | 1.80 to 25.37 |
| index ranges | −28≤h≤28 | 0≤h≤10 |
| 0≤k≤10 | 0≤k≤26 | |
| 0≤l≤11 | −2≤l≤27 | |
| reflections collected | 3304 | 4308 |
| independent reflections | 1676 [ | 3879 [ |
| max. and min. transmission | 0.9918/0.9757 | 0.9924/0.9849 |
| data/restraints/parameters | 1676/0/120 | 3879/8/253 |
| goodness-of-fit on | 1.000 | 1.001 |
| final | 0.0506, 0.1382 | 0.0772, 0.1140 |
|
| 0.0849, 0.1585 | 0.2084, 0.1488 |
| largest diff. peak and hole [e·Å−3] | 0.241 and −0.150 | 0.149 and −0.180 |
Selected crystal structure parameters of a and b.
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| O-C7 | 1.227(2) | 1.2335 | 1.2337 |
| N1-C7 | 1.348(3) | 1.387 | 1.3866 |
| N1-C6 | 1.405(3) | 1.4098 | 1.4093 |
| N2-C10 | 1.343(3) | 1.384 | 1.3837 |
|
| |||
| C7-N1-C6 | 127.10(18) | 129.1118 | 129.0683 |
| C10-N2-C10A | 120.9(3) | 125.4339 | 125.3796 |
| C5-C6-N1 | 118.3(2) | 116.8468 | 116.8731 |
| C1-C6-N1 | 122.7(2) | 123.9904 | 123.9536 |
| O-C7-N1 | 123.4(2) | 121.6942 | 121.746 |
| O-C7-C8 | 122.5(2) | 123.5201 | 123.497 |
| N1-C7-C8 | 114.13(17) | 114.7855 | 114.7569 |
| N2-C10-C8 | 121.2(2) | 119.5133 | 119.5371 |
| N2-C10-C11 | 115.3(2) | 113.6535 | 113.7053 |
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| N2-C8 | 1.347(4) | 1.3861 | 1.3856 |
| N2-C9 | 1.414(4) | 1.4103 | 1.4099 |
| O2-C16 | 1.239(3) | 1.2339 | 1.2342 |
| C3-N1 | 1.303(4) | 1.3841 | 1.3838 |
| N3-C16 | 1.360(4) | 1.2339 | 1.2342 |
| N3-C17 | 1.436(3) | 1.4103 | 1.4099 |
| N1-C4 | 1.331(4) | 1.3841 | 1.3838 |
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| |||
| C8-N2-C9 | 127.2(3) | 129.0404 | 128.9959 |
| N1-C3-C2 | 122.5(3) | 119.5227 | 119.5469 |
| N1-C3-C6 | 115.8(3) | 113.6518 | 113.7043 |
| C16-N3-C17 | 125.0(3) | 129.0401 | 128.9947 |
| C3-N1-C4 | 121.4(3) | 125.4196 | 125.3645 |
| N1-C4-C5 | 121.7(3) | 119.5228 | 119.547 |
| N1-C4-C7 | 116.7(3) | 113.6518 | 113.7043 |
| O1-C8-N2 | 123.0(3) | 121.6857 | 121.7401 |
| O1-C8-C5 | 120.9(3) | 123.5064 | 123.481 |
| N2-C8-C5 | 116.1(3) | 114.8079 | 114.7788 |
| C10-C9-N2 | 122.9(3) | 124.1974 | 124.1565 |
| C14-C9-N2 | 117.8(3) | 117.1108 | 117.1363 |
| O2-C16-N3 | 121.8(3) | 121.686 | 121.7402 |
| O2-C16-C2 | 123.5(3) | 123.5067 | 123.4814 |
| N3-C16-C2 | 114.7(3) | 114.8073 | 114.7784 |
Parameters (Å, °) for the intra- and intermolecular interactions in a and b.
| Comp. | D-H…A | D-H | H…A | D…A | D-H…A |
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| |||||
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| C1-H1B…O | 0.9300 | 2.4900 | 2.940(3) | 110.00 |
| C11-H11B…O | 0.9600 | 2.5800 | 2.987(3) | 106.00 | |
| N1-H1A…Oa | 0.8600 | 2.0700 | 2.907(2) | 166.00 | |
|
| C6-H6C…O2 | 0.9600 | 2.5500 | 2.958(4) | 106.00 |
| C7-H7C…O1 | 0.9600 | 2.5000 | 2.883(4) | 104.00 | |
| C10-H10A…O1 | 0.9300 | 2.5000 | 2.953(5) | 110.00 | |
| C22-H22A…O2 | 0.9300 | 2.5500 | 2.940(4) | 106.00 | |
| Comp. | C-H… | C-H | H… | C… | C-H… |
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| C1-H1B… | 0.9300 | 3.1078 | 3.942(3) | 150.26 |
| C1-H1B… | 0.9300 | 3.1078 | 3.942(3) | 150.26 | |
| C3-H3A… | 0.9300 | 3.0490 | 3.832(3) | 142.92 | |
| C11-H11A… | 0.9600 | 3.2060 | 3.567(3) | 104.33 | |
| C11-H11C… | 0.9600 | 3.1510 | 3.567(3) | 108.05 | |
|
| C11-H11A… | 0.9300 | 3.3216 | 4.212(4) | 161.06 |
Symmetry codes: ax, 1−y, 1/2+z. b1−x,1−y,−z. cx,1−y,−1/2+z. d1/2−x,1/2+y, z. ex,−1+y, z. f1/2−x,−1/2+y, z.
Figure 2Crystal structure of a.
Figure 3Crystal structure of b.
Figure 4The optimized geometries and the surfaces of the frontier molecular orbital of a-e obtained at the B3LYP/6-31G (d) level.
Experimental and calculated vibrational frequencies (cm−1) with DFT method.
| Assignments | a | b | c | d | e | |||||
| Exp. (IR) | B3LYP/6-31G (d) | Exp. (IR) | B3LYP/6-31G (d) | Exp. (IR) | B3LYP/6-31G (d) | Exp. (IR) | B3LYP/6-31G (d) | Exp. (IR) | B3LYP/6-31G (d) | |
|
| 3405 | 3395 | 3407 | 3401 | 3373 | |||||
| 3279 | 3282 | 3313 | 3306 | 3312 | 3294 | |||||
| 3171 | 3161 | |||||||||
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| 3070 | 3056 | 3097 | 3093 | 3050 | 3055 | 3012 | 3038 | ||
| 3017 | 3024 | 3037 | 3020 | |||||||
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| 2910 | 2921 | 2920 | 2920 | 2970 | 2916 | 2928 | 2942 | 2931 | |
| 2856 | 2918 | 2922 | 2927 | 2850 | 2841 | |||||
| 2793 | 2847 | |||||||||
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| 1678 | 1684 | 1673 | 1675 | 1681 | 1689 | 1675 | 1670 | 1675 | 1666 |
| 1651 | 1653 | |||||||||
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| 1593 | 1587 | 1596 | 1579 | 1605 | 1598 | 1640 | 1601 | 1622 | |
| 1525 | 1536 | 1509 | 1513 | 1505 | 1502 | 1517 | 1517 | 1515 | 1517 | |
| 1498 | 1492 | 1450 | 1448 | 1482 | 1491 | |||||
| 1432 | 1446 | 1445 | 1446 | |||||||
|
| 1369 | 1369 | 1400 | 1355 | 1352 | 1397 | 1408 | |||
| 1351 | 1352 | |||||||||
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| 1310 | 1325 | 1318 | 1325 | 1313 | 1312 | 1311 | 1320 | 1305 | 1288 |
| 1290 | 1284 | 1285 | 1285 | 1283 | 1281 | 1268 | 1269 | 1214 | 1219 | |
| 1238 | 1231 | 1216 | 1217 | 1250 | 1267 | 1212 | 1236 | 1165 | 1183 | |
| 1210 | 1212 | 1121 | 1114 | 1205 | 1134 | 1142 | 1126 | 1139 | ||
| 1118 | 1119 | 1014 | 1018 | 1132 | 1141 | 1012 | 1017 | 1036 | 1038 | |
| 1035 | 1030 | 1014 | 1021 | |||||||
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| 751 | 756 | 813 | 820 | 841 | 852 | 861 | 857 | 846 | |
| 692 | 694 | 751 | 755 | 751 | 753 | 808 | 807 | 822 | 830 | |
|
| 732 | 718 | ||||||||
Figure 5Experimental (Red) and simulated (Blue) Infrared spectra of a-e.
Frontier orbitals and energy gaps (Eg).
| Comp. | HOMO-3 | HOMO-2 | HOMO-1 | HOMO | LUMO | LUMO+1 | LUMO+2 | LUMO+3 | Eg (eV) |
|
| −0.247 | −0.220 | −0.216 | −0.196 | −0.050 | −0.011 | 0.000 | 0.000 | 0.146 |
|
| −0.246 | −0.215 | −0.211 | −0.195 | −0.049 | −0.010 | 0.000 | 0.000 | 0.146 |
|
| −0.240 | −0.225 | −0.223 | −0.194 | −0.044 | −0.005 | 0.003 | 0.004 | 0.15 |
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| −0.239 | −0.220 | −0.218 | −0.193 | −0.043 | −0.003 | 0.003 | 0.004 | 0.15 |
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| −0.239 | −0.215 | −0.214 | −0.192 | −0.044 | −0.018 | −0.011 | 0.002 | 0.148 |
Figure 6Molecular electrostatic potential of a–e.
Figure 7Experimental and calculated UV-vis spectra of a–e.
Electronic absorption spectra of a–e in ethanol.
| Comp. | λmax/nm | ε λmax/(L/mol·cm) |
|
| 266/368 | 2.39×104/1.01×104 |
|
| 268/366 | 2.66×104/1.10×104 |
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| 256/364 | 2.04×104/1.06×104 |
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| 254/364 | 1.81×104/0.88×104 |
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| 272/310/373 | 2.61×104/2.74×104/1.72×104 |
Calculated absorption spectra of a–e in vacuum and in ethanol.
| Molecular | States | Transition | Coefficient | Strength | λ (nm) (cal.) | λ (nm) (exp.) | Relative error (%) |
|
| gas-phase | S0→S1 | 0.66371 | 0.3068 | 361 | 1.9 | |
| ethanol | 0.66600 | 0.3530 | 376 | 368 | −2.1 | ||
|
| gas-phase | S0→S1 | 0.66471 | 0.3433 | 363 | 0.8 | |
| ethanol | 0.66743 | 0.3852 | 377 | 366 | −2.9 | ||
|
| gas-phase | S0→S1 | 0.65822 | 0.2732 | 352 | 3.4 | |
| ethanol | 0.66113 | 0.3138 | 365 | 364 | −0.3 | ||
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| gas-phase | S0→S1 | 0.65954 | 0.2948 | 353 | 3.1 | |
| ethanol | 0.66192 | 0.3315 | 365 | 364 | −0.3 | ||
|
| gas-phase | S0→S1 | 0.66073 | 0.3270 | 355 | 5.1 | |
| ethanol | 0.66218 | 0.3605 | 368 | 373 | 1.4 |
Figure 8Experimental fluorescence spectra of a–e.
Florescence spectra of a–e in ethanol.
| Comp. | λex (nm) | λem (nm) | Stokes shift (nm) |
|
| 374 | 452 | 78 |
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| 375 | 450 | 75 |
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| 370 | 444 | 74 |
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| 370 | 441 | 71 |
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| 380 | 460 | 80 |
Yield, melt point, and EA data of compounds a–e.
| Compd. | Yield (%) | Physical state | m.p./°C | Elemental anal. (%, Calcd.) |
|
| 78.3 | Light yellow cryst. | 224–226 | C 72.36(72.60), H 6.11(6.09), N 12.15(12.10) |
|
| 76.1 | Yellow cryst. | 232–234 | C 73.32(73.57), H 6.74(6.71), N 11.15(11.19) |
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| 70.3 | Light yellow cryst. | 244–247 | C 73.31(73.57), H 6.68(6.71), N 11.23(11.19) |
|
| 73.8 | Light yellow cryst. | 307–309 | C 74.69(74.41), H 7.27(7.24), N 10.36(10.41) |
|
| 62.6 | Yellow cryst. | 238–241 | C 56.23(55.98), H 5.10(5.07), N 7.79(7.83) |
1H NMR data °f compounds a–e.
|
| 9.06 (s, 2 H, NH), 7.76 (s, 1 H, NH), 7.64–6.98 (m, 10 H, Ar-H), 3.41 (s, 2 H, CH2), 2.02 (s, 6 H, CH3) |
|
| 8.95 (s, 2 H, NH), 7.71 (s, 1 H, NH), 7.50 (d, J = 8.6 Hz, 4 H, Ar-H), 7.07 (d, J = 8.6 Hz, 4 H, Ar-H), 3.38 (s, 2 H, CH2), 2.24 (s, 6 H, CH3), 2.01 (s, 6 H, CH3) |
|
| 8.49 (s, 2 H, NH), 7.77 (s, 1 H, NH), 7.36–7.04 (m, 8 H, Ar-H), 3.49 (s, 2 H, CH2), 2.20 (s, 6 H, CH3), 2.09 (s, 6 H, CH3) |
|
| 8.42 (s, 2 H, NH), 7.72 (s, 1 H, NH), 7.20–6.93 (m, 6 H, Ar-H), 3.45 (s, 2 H, CH2), 2.25 (s, 6 H, CH3), 2.15 (s, 6 H, CH3), 2.08 (s, 6 H, CH3) |
|
| 8.34 (s, 2 H, NH), 7.84 (s, 1 H, NH), 6.93 (d, J = 4.8 Hz, 2 H, Ar-H), 6.91 (d, J = 1.7 Hz, 2 H, Ar-H), 3.94 (s, 6 H, OCH3), 3.85 (s, 6 H, OCH3), 3.51 (s, 2 H, CH2), 2.25 (s, 6 H, CH3) |