| Literature DB >> 24625025 |
Ivan Bieche, Sophie Vacher, David Vallerand, Sophie Richon, Rana Hatem, Ludmilla De Plater, Ahmed Dahmani, Fariba Némati, Eric Angevin, Elisabetta Marangoni, Sergio Roman-Roman, Didier Decaudin, Virginie Dangles-Marie1.
Abstract
BACKGROUND: Tumor endothelial transdifferentiation and VEGFR1/2 expression by cancer cells have been reported in glioblastoma but remain poorly documented for many other cancer types.Entities:
Mesh:
Substances:
Year: 2014 PMID: 24625025 PMCID: PMC4007753 DOI: 10.1186/1471-2407-14-178
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Normalized gene expression for each of the 150 PDX samples, classified by tumor type (noted in bold)
| Pure human control | | 0% | 1265 | 0 | 796 | 0 | 2610 | 0 | 157 | 0 | 287 | 0 | |
| Pure mouse control | | 100% | 0 | 1176 | 0 | 736 | 0 | 303 | 0 | 879 | 0 | 790 | |
| | | | | | | | | | | | | | |
| CRC#1 | Primary | 11% | 0 | 894 | 2 | 492 | 23 | 453 | 0 | 405 | 4010 | 212 | 5% |
| CRC#2 | Primary | 5% | 0 | 917 | 3 | 398 | 9 | 383 | 0 | 309 | 4912 | 51 | 1% |
| CRC#3 | Metastasis | 21% | 1 | 2380 | 34 | 893 | 14 | 843 | 0 | 803 | 4642 | 628 | 12% |
| CRC#4 | Primary | 17% | 0 | 836 | <1 | 285 | 0 | 368 | 0 | 299 | 2876 | 302 | 10% |
| CRC#5 | Metastasis | 8% | 0 | 813 | 0 | 492 | 3 | 337 | 0 | 374 | 3552 | 109 | 3% |
| CRC#6 | Primary | 9% | 46 | 458 | 217 | 326 | 77 | 196 | <1 | 176 | 1866 | 84 | 4% |
| CRC#7 | Metastasis | 8% | 17 | 553 | 27 | 272 | 65 | 292 | 0 | 210 | 5230 | 251 | 5% |
| CRC#8 | Primary | 14% | 0 | 1193 | 469 | 614 | 3 | 349 | 0 | 689 | 2999 | 92 | 3% |
| CRC#9 | Primary | 8% | 0 | 967 | 8 | 550 | 3 | 475 | 0 | 379 | 7973 | 204 | 2% |
| CRC#10 | Primary | 10% | 0 | 733 | <1 | 409 | 176 | 246 | 0 | 284 | 3463 | 124 | 3% |
| CRC#11 | Metastasis | 9% | 1 | 1083 | <1 | 481 | 300 | 567 | 0 | 410 | 5461 | 135 | 2% |
| CRC#12 | Metastasis | 4% | 48 | 479 | 0 | 182 | 26 | 274 | 0 | 230 | 4937 | 106 | 2% |
| CRC#13 | Metastasis | 4% | 3 | 356 | 5 | 135 | 289 | 163 | 0 | 168 | 3606 | 145 | 4% |
| CRC#14 | Primary | 2% | <1 | 260 | 7 | 139 | 305 | 119 | 0 | 143 | 5085 | 76 | 1% |
| CRC#15 | Primary | 17% | <1 | 1287 | <1 | 715 | 51 | 530 | 0 | 419 | 6541 | 311 | 5% |
| CRC#16 | Metastasis | 5% | <1 | 477 | 44 | 237 | 89 | 197 | 0 | 219 | 3406 | 196 | 5% |
| CRC#17 | Primary | 17% | 21 | 1067 | 49 | 539 | 42 | 382 | 0 | 323 | 3674 | 555 | 13% |
| CRC#18 | Primary | 14% | 4 | 1078 | 81 | 550 | 33 | 370 | <1 | 356 | 2016 | 262 | 12% |
| CRC#19 | Primary | 4% | 3 | 288 | <1 | 162 | <1 | 120 | 0 | 135 | 4258 | 111 | 3% |
| CRC#20 | Metastasis | 22% | 4 | 1580 | 19 | 754 | 10 | 584 | <1 | 684 | 5604 | 391 | 7% |
| CRC#21 | Metastasis | 17% | 10 | 1336 | 373 | 749 | 10 | 656 | 0 | 639 | 4894 | 432 | 8% |
| CRC#22 | Primary | 18% | 0 | 2315 | 322 | 1081 | 32 | 908 | 0 | 1262 | 4671 | 1244 | 21% |
| CRC#23 | Metastasis | 8% | 0 | 446 | 407 | 406 | 42 | 202 | 0 | 173 | 2360 | 155 | 6% |
| CRC#24 | Primary | 12% | 0 | 981 | 5 | 581 | 13 | 508 | 0 | 331 | 4773 | 233 | 5% |
| CRC#25 | Primary | 5% | 0 | 622 | 36 | 329 | 0 | 246 | 0 | 285 | 2643 | 68 | 3% |
| CRC#26 | Primary | 11% | 0 | 1245 | 569 | 480 | 112 | 375 | 0 | 296 | 3607 | 237 | 6% |
| CRC#27 | Primary | 14% | 4 | 1789 | 3 | 895 | 83 | 682 | 0 | 581 | 3101 | 891 | 22% |
| CRC#28 | Carcinosis | 5% | 3 | 526 | 1 | 326 | 1 | 215 | 0 | 268 | 2545 | 29 | 1% |
| CRC#29 | Primary | 11% | 5 | 1000 | 2 | 541 | 0 | 364 | 0 | 344 | 3172 | 391 | 11% |
| CRC#30 | Primary | 7% | 0 | 753 | 11 | 332 | 22 | 282 | 0 | 258 | 2247 | 231 | 9% |
| CRC#31 | Metastasis | 10% | <1 | 629 | 1 | 294 | 29 | 241 | 0 | 216 | 2896 | 210 | 7% |
| CRC#32 | Primary | 16% | 0 | 1073 | 304 | 556 | 28 | 357 | 0 | 469 | 1731 | 166 | 9% |
| CRC#33 | Primary | 7% | 4 | 563 | <1 | 277 | 7 | 202 | 0 | 218 | 1253 | 129 | 9% |
| CRC#34 | Primary | 13% | 2 | 749 | 379 | 530 | 15 | 306 | 0 | 390 | 4293 | 157 | 4% |
| CRC#35 | Primary | 9% | 0 | 958 | 3 | 484 | 9 | 329 | 0 | 318 | 2206 | 212 | 9% |
| CRC#36 | Primary | 21% | 1 | 991 | 0 | 504 | 32 | 388 | <1 | 436 | 3296 | 140 | 4% |
| CRC#37 | Primary | 19% | 6 | 1978 | 16 | 840 | 10 | 391 | 0 | 668 | 2692 | 182 | 6% |
| CRC#38 | Primary | 8% | 2 | 1114 | 8 | 446 | 2 | 320 | 0 | 367 | 1889 | 218 | 10% |
| CRC#39 | Metastasis | 12% | 0 | 1156 | 478 | 523 | 40 | 366 | 0 | 418 | 4034 | 214 | 5% |
| CRC#40 | Primary | 10% | <1 | 547 | 94 | 356 | 49 | 199 | 0 | 242 | 1848 | 142 | 7% |
| CRC#41 | Carcinosis | 16% | 0 | 1552 | 3 | 762 | 7 | 325 | 0 | 457 | 918 | 228 | 20% |
| CRC#42 | Primary | 31% | 0 | 1786 | <1 | 922 | 94 | 447 | 0 | 599 | 2710 | 493 | 15% |
| CRC#43 | Primary | 10% | 0 | 1024 | 75 | 459 | 249 | 358 | 2 | 431 | 4126 | 272 | 6% |
| CRC#44 | Carcinosis | 15% | <1 | 938 | 159 | 565 | 1 | 285 | 0 | 364 | 2523 | 269 | 10% |
| CRC#45 | Primary | 12% | 1654 | 807 | 512 | 388 | 9 | 215 | 1 | 332 | 969 | 124 | 11% |
| CRC#46 | Primary | 3% | <1 | 412 | 3 | 158 | 2 | 139 | 0 | 168 | 1865 | 61 | 3% |
| CRC#47 | Metastasis | 6% | 0 | 521 | 2 | 252 | <1 | 173 | 0 | 195 | 1662 | 68 | 4% |
| CRC#48 | Carcinosis | 10% | 0 | 843 | <1 | 417 | 0 | 252 | 0 | 252 | 1705 | 227 | 12% |
| CRC#49 | Metastasis | 6% | 1 | 379 | 426 | 274 | 11 | 248 | 0 | 267 | 4587 | 149 | 3% |
| CRC#50 | Metastasis | 18% | 31 | 1697 | 0 | 690 | 23 | 485 | 0 | 421 | 5271 | 299 | 5% |
| CRC#51 | Primary | 23% | 0 | 1294 | 2 | 662 | 67 | 476 | 0 | 375 | 6660 | 583 | 8% |
| CRC#52 | Primary | 38% | 14 | 3265 | 398 | 1126 | 640 | 736 | 0 | 836 | 7517 | 953 | 11% |
| CRC#53 | Metastasis | 19% | 0 | 1657 | 0 | 566 | 15 | 430 | 0 | 430 | 4014 | 209 | 5% |
| | |||||||||||||
| | | | | | | | | | | | | | |
| OVC#1 | Metastasis | 28% | 42 | 2575 | 0 | 1498 | 89 | 1191 | 159 | 867 | 10390 | 459 | 4% |
| OVC#2 | Metastasis | 5% | 4 | 565 | 99 | 350 | 2 | 439 | 34 | 259 | 6391 | 88 | 1% |
| OVC#3 | Metastasis | 21% | 1 | 1427 | 304 | 809 | 69 | 406 | <1 | 583 | 3133 | 710 | 18% |
| OVC#4 | Primary | 6% | 26 | 709 | 9 | 474 | 0 | 259 | 4 | 272 | 1528 | 144 | 9% |
| OVC#5 | Primary | 7% | 16 | 974 | 81 | 807 | 0 | 802 | 45 | 525 | 14226 | 95 | 1% |
| OVC#6 | Primary | 12% | 3 | 2052 | 97 | 593 | 19 | 734 | 101 | 528 | 2628 | 427 | 14% |
| OVC#7 | Primary | 8% | 0 | 762 | 4 | 470 | 0 | 270 | 32 | 278 | 6156 | 266 | 4% |
| OVC#8 | Primary | 3% | 2 | 219 | 30 | 119 | 6 | 88.8 | 3 | 59.2 | 652 | 37 | 5% |
| OVC#9 | Primary | 8% | 5 | 1795 | 2 | 674 | 3 | 518 | 5 | 372 | 2981 | 184 | 6% |
| OVC#10 | Primary | 4% | 1 | 444 | 16 | 288 | 0 | 204 | 22 | 141 | 2812 | 52 | 2% |
| OVC#11 | Primary | 20% | 24 | 1586 | 54 | 1036 | 0 | 482 | 2 | 648 | 2781 | 493 | 15% |
| OVC#12 | Primary | 13% | 3 | 877 | 177 | 487 | 0 | 259 | 12 | 285 | 1720 | 127 | 7% |
| OVC#13 | Primary | 3% | 17 | 550 | 207 | 263 | 2 | 196 | <1 | 224 | 1134 | 16 | 1% |
| OVC#14 | Primary | 5% | 0 | 332 | <1 | 255 | 21 | 238 | <1 | 164 | 19239 | 62 | 0% |
| | |||||||||||||
| | | | | | | | | | | | | | |
| GBM#1 | Primary | 8% | 22 | 712 | 2051 | 457 | 378 | 559 | 8 | 186 | 18822 | 241 | 1% |
| GBM#2 | Primary | 13% | 1 | 1351 | 1143 | 819 | 0 | 799 | 378 | 328 | 17084 | 296 | 2% |
| GBM#3 | Primary | 13% | 1 | 2372 | 422 | 1184 | 0 | 1325 | 0 | 1237 | 8452 | 131 | 2% |
| GBM#4 | Primary | 5% | 55 | 870 | 321 | 328 | 0 | 503 | 0 | 372 | 5923 | 78 | 1% |
| GBM#5 | Primary | 15% | 0 | 2600 | 268 | 1389 | 28 | 1361 | 294 | 1413 | 15443 | 100 | 1% |
| | |||||||||||||
| | | | | | | | | | | | | | |
| BC#1 | Primary | 2% | <1 | 222 | 204 | 113 | 3 | 89.4 | 2 | 80.7 | 637 | 114 | 15% |
| BC#2 | Primary | 8% | 0 | 666 | 177 | 335 | 19 | 289 | 0 | 162 | 2997 | 310 | 9% |
| BC#3 | Metastasis | 10% | 0 | 679 | 286 | 447 | 5 | 539 | 36 | 259 | 4961 | 334 | 6% |
| BC#4 | Primary | 15% | 46 | 803 | 91 | 498 | 5 | 366 | 0 | 222 | 3547 | 447 | 11% |
| BC#5 | Primary | 1% | <1 | 116 | 0 | 61.9 | 33 | 89.1 | 4 | 31.9 | 15066 | 77 | 1% |
| BC#6 | Metastasis | 15% | 2 | 1351 | 289 | 634 | 29 | 719 | 150 | 439 | 17360 | 357 | 2% |
| BC#7 | Primary | 22% | 8 | 1908 | 442 | 887 | 0 | 1370 | 0 | 739 | 27659 | 365 | 1% |
| BC#8 | Primary | 6% | 1 | 810 | 149 | 412 | 18 | 327 | 9 | 280 | 8360 | 160 | 2% |
| BC#9 | Metastasis | 10% | 0 | 713 | 6 | 322 | 13 | 420 | 0 | 279 | 1020 | 294 | 22% |
| BC#10 | Primary | 6% | 3 | 370 | 460 | 233 | 0 | 325 | 17 | 134 | 7447 | 154 | 2% |
| BC#11 | Primary | 6% | 6 | 993 | 347 | 403 | 29 | 461 | 68 | 325 | 14282 | 256 | 2% |
| BC#12 | Primary | 8% | 6 | 1005 | 466 | 543 | 28 | 664 | 3 | 391 | 25794 | 363 | 1% |
| BC#13 | Primary | 7% | 0 | 575 | 92 | 256 | 8 | 266 | 15 | 189 | 6174 | 132 | 2% |
| BC#14 | Primary | 8% | 654 | 745 | 45 | 413 | 0 | 279 | 2 | 253 | 3294 | 71 | 2% |
| BC#15 | Metastasis | 11% | 4 | 912 | 50 | 461 | 1 | 311 | 0 | 286 | 3458 | 186 | 5% |
| BC#16 | Primary | 2% | 0 | 199 | 188 | 94.6 | 4 | 73.6 | 2 | 69.7 | 610 | 100 | 14% |
| BC#17 | Primary | 4% | 13 | 413 | 346 | 134 | 66 | 173 | 32 | 101 | 2131 | 197 | 8% |
| BC#18 | Primary | 10% | <1 | 1545 | 168 | 743 | 3 | 788 | 11 | 382 | 6550 | 167 | 2% |
| BC#19 | Metastasis | 16% | <1 | 2304 | 167 | 1188 | 5 | 1049 | 10 | 771 | 6004 | 280 | 4% |
| BC#20 | Primary | 17% | 0 | 1967 | 340 | 959 | 1 | 709 | 20 | 634 | 11533 | 357 | 3% |
| BC#21 | Primary | 9% | 0 | 730 | 334 | 332 | 2 | 476 | 91 | 202 | 8166 | 520 | 6% |
| BC#22 | Primary | 6% | 0 | 598 | 451 | 222 | 10 | 334 | 90 | 124 | 5088 | 264 | 5% |
| BC#23 | Primary | 4% | 0 | 377 | 331 | 179 | 2 | 195 | 19 | 83.3 | 1742 | 51 | 3% |
| BC#24 | Primary | 22% | 1 | 1128 | 858 | 982 | 79 | 999 | <1 | 495 | 21363 | 668 | 3% |
| BC#25 | Primary | 10% | 0 | 1165 | 666 | 573 | 94 | 627 | 12 | 474 | 14542 | 244 | 2% |
| BC#26 | Primary | 10% | 0 | 1446 | 429 | 572 | 0 | 685 | 230 | 510 | 5771 | 257 | 4% |
| BC#27 | Primary | 14% | 2 | 880 | 4 | 452 | 94 | 415 | <1 | 222 | 1505 | 299 | 17% |
| BC#28 | Primary | 5% | <1 | 182 | 91 | 113 | 7 | 119 | 6 | 80.3 | 1221 | 50 | 4% |
| BC#29 | Primary | 9% | <1 | 656 | 530 | 469 | 32 | 532 | 9 | 473 | 50360 | 255 | 1% |
| BC#30 | Primary | 7% | 3 | 823 | 94 | 341 | 247 | 403 | 34 | 244 | 9097 | 373 | 4% |
| BC#31 | Primary | 4% | 0 | 345 | 166 | 216 | 0 | 161 | 3 | 145 | 1085 | 79 | 7% |
| BC#32 | Primary | 7% | <1 | 629 | 13 | 276 | 4 | 237 | 19 | 194 | 1544 | 198 | 11% |
| BC#33 | Primary | 9% | <1 | 725 | 397 | 428 | 232 | 549 | 6 | 231 | 5414 | 144 | 3% |
| BC#34 | Primary | 14% | 5 | 1061 | 245 | 557 | 0 | 457 | 0 | 308 | 3866 | 176 | 4% |
| BC#35 | Primary | 5% | 2 | 484 | 103 | 358 | 3 | 506 | 50 | 185 | 23896 | 360 | 1% |
| BC#36 | Primary | 13% | 0 | 1085 | 221 | 544 | 0 | 333 | 13 | 347 | 1153 | 231 | 17% |
| BC#37 | Primary | 4% | 0 | 376 | 193 | 149 | <1 | 144 | 13 | 120 | 1081 | 289 | 21% |
| BC#38 | Primary | 6% | 2 | 776 | 90 | 415 | 8 | 326 | 12 | 281 | 4683 | 178 | 4% |
| BC#39 | Primary | 14% | 0 | 961 | 5 | 731 | 83 | 691 | 4 | 606 | 4829 | 152 | 3% |
| | |||||||||||||
| | | | | | | | | | | | | | |
| CM#1 | Metastasis | 11% | 0 | 1725 | 2985 | 825 | 0 | 953 | 83 | 1026 | 10386 | 1401 | 12% |
| CM#2 | Metastasis | 7% | 27 | 544 | 1391 | 426 | 768 | 360 | 0 | 184 | 10696 | 315 | 3% |
| CM#3 | Metastasis | 4% | 1 | 282 | 257 | 180 | 0 | 122 | 1 | 155 | 599 | 102 | 14% |
| CM#4 | Primary | 20% | 0 | 3306 | 784 | 1178 | 427 | 883 | 38 | 836 | 9188 | 718 | 7% |
| CM#5 | Metastasis | 8% | 9 | 936 | 872 | 363 | 15 | 587 | 0 | 289 | 5590 | 201 | 3% |
| CM#6 | Metastasis | 3% | <1 | 342 | 648 | 196 | 6 | 188 | 5 | 236 | 960 | 23 | 2% |
| CM#7 | Metastasis | 1% | 2 | 176 | 382 | 83.6 | 2 | 135 | <1 | 84.3 | 5962 | 37 | 1% |
| CM#8 | Primary | 10% | 9 | 4760 | 876 | 705 | 0 | 2230 | 5 | 841 | 16732 | 239 | 1% |
| CM#9 | Metastasis | 1% | 0 | 118 | 284 | 61.6 | 20 | 125 | 14 | 73.6 | 3704 | 24 | 1% |
| CM#10 | Primary | 10% | 0 | 876 | 756 | 300 | 0 | 248 | 279 | 285 | 387 | 126 | 25% |
| CM#11 | Metastasis | 8% | 2 | 641 | 1102 | 427 | 0 | 355 | 1 | 309 | 8837 | 266 | 3% |
| CM#12 | Primary | 5% | 0 | 530 | 112 | 186 | 0 | 440 | 0 | 423 | 683 | 26 | 4% |
| CM#13 | Metastasis | 2% | <1 | 243 | 145 | 101 | <1 | 116 | 1 | 82.2 | 466 | 31 | 6% |
| | |||||||||||||
| | | | | | | | | | | | | | |
| RCC#1 | Primary | 17% | 0 | 1179 | 569 | 1002 | 0 | 680 | 2 | 473 | 19769 | 1513 | 7% |
| RCC#2 | Primary | 12% | 0 | 3362 | 16 | 1929 | 0 | 1934 | 0 | 3043 | 27096 | 54 | 0% |
| RCC#3 | Primary | 27% | 0 | 5431 | 411 | 2376 | 0 | 1866 | 0 | 1974 | 25792 | 211 | 1% |
| RCC#4 | Metastasis | 11% | 120 | 2117 | 256 | 1430 | 4 | 1512 | 0 | 1337 | 13968 | 89 | 1% |
| RCC#5 | Primary | 16% | 5 | 2906 | 33 | 1942 | 3 | 1624 | 0 | 2102 | 25817 | 87 | 0% |
| RCC#6 | Primary | 1% | 1 | 341 | 2 | 125 | 2 | 157 | 47 | 119 | 609 | 13 | 2% |
| RCC#7 | Primary | 21% | 0 | 768 | 549 | 1908 | 0 | 1292 | 0 | 1324 | 27232 | 157 | 1% |
| RCC#8 | Metastasis | 17% | 1 | 842 | 410 | 778 | 0 | 466 | 0 | 286 | 1756 | 930 | 35% |
| RCC#9 | Metastasis | 13% | 17 | 2024 | 230 | 1258 | 3 | 827 | 1 | 904 | 37839 | 55 | 0% |
| RCC#10 | Primary | 11% | 0 | 2010 | 856 | 1359 | 0 | 1070 | 2 | 672 | 37217 | 83 | 0% |
| RCC#11 | Primary | 5% | 2 | 597 | 907 | 350 | 0 | 487 | 0 | 253 | 5091 | 136 | 3% |
| RCC#12 | Metastasis | 14% | 0 | 2546 | 257 | 1132 | 0 | 871 | 0 | 1040 | 16952 | 61 | 0% |
| RCC#13 | Primary | 21% | 0 | 4963 | 38 | 3466 | 0 | 3281 | 0 | 3966 | 30645 | 155 | 1% |
| RCC#14 | Primary | 6% | 330 | 1338 | 364 | 602 | 0 | 661 | 2 | 343 | 26952 | 52 | 0% |
| RCC#15 | Primary | 6% | 77 | 565 | 1036 | 293 | 0 | 368 | 0 | 291 | 2210 | 59 | 3% |
| | |||||||||||||
| | | | | | | | | | | | | | |
| | | | | | | | | | | | | | |
| SCLC#1 | Primary | 8% | 0 | 1030 | 3 | 387 | 0 | 250 | 0 | 196 | 419 | 43 | 9% |
| SCLC#2 | Primary | 3% | 2 | 632 | 0 | 238 | 5 | 189 | 0 | 185 | 1300 | 52 | 4% |
| SCLC#3 | Primary | 4% | 4 | 591 | 0 | 259 | 1 | 232 | 2 | 232 | 1117 | 49 | 4% |
| SCLC#4 | Primary | 3% | 7 | 395 | 0 | 222 | 0 | 166 | 0 | 162 | 1498 | 46 | 3% |
| SCLC#5 | Metastasis | 2% | 0 | 309 | 1 | 153 | 0 | 160 | 2 | 122 | 893 | 56 | 6% |
| SCLC#6 | Primary | 7% | 2 | 670 | 9 | 221 | 471 | 208 | 72 | 192 | 954 | 86 | 8% |
| | |||||||||||||
| | | | | | | | | | | | | ||
| NSCLC#1 | Primary | 28% | 3 | 1969 | 61 | 941 | 2 | 1145 | 14 | 637 | 18440 | 794 | 4% |
| NSCLC#2 | Primary | 8% | 0 | 1270 | 0 | 611 | 0 | 511 | 335 | 639 | 5911 | 98 | 2% |
| NSCLC#3 | Primary | 22% | 95 | 1590 | 31 | 1438 | 124 | 961 | 930 | 669 | 18346 | 429 | 2% |
| NSCLC#4 | Primary | 5% | 2 | 686 | 5 | 339 | 4 | 212 | 59 | 221 | 875 | 85 | 9% |
| NSCLC#5 | Primary | 20% | 3 | 1363 | 667 | 1387 | 184 | 896 | 3106 | 652 | 10612 | 688 | 6% |
Relationships between mouse (m) and human (h) mRNA levels in the 150 human tumor xenografts
| 0.0251 | | | | | | | | | | |
| | 0.762 | | | | | | | | | |
| 0.043 | 0.121 | | | | | | | | | |
| | 0.60 | 0.14 | | | | | | | | |
| 0.040 | 0.928 | 0.189 | | | | | | | | |
| | 0.63 | | | | | | | | ||
| 0.065 | 0.022 | -0.076 | 0.004 | | | | | | | |
| | 0.43 | 0.79 | 0.35 | 0.96 | | | | | | |
| 0.076 | 0.851 | 0.305 | 0.877 | 0.006 | | | | | | |
| | 0.35 | 0.94 | | | | | | |||
| 0.010 | -0.029 | 0.232 | -0.036 | -0.036 | 0.070 | | | | | |
| | 0.91 | 0.72 | 0.66 | 0.66 | 0.40 | | | | | |
| 0.003 | 0.912 | 0.173 | 0.919 | -0.017 | 0.858 | -0.090 | | | | |
| | 0.98 | 0.83 | 0.27 | | | | ||||
| 0.095 | 0.477 | 0.319 | 0.563 | 0.090 | 0.726 | 0.131 | 0.517 | | | |
| | 0.25 | 0.27 | 0.11 | | | |||||
| 0.031 | 0.505 | 0.194 | 0.524 | 0.304 | 0.514 | 0.062 | 0.413 | 0.328 | | |
| | 0.70 | 0.45 | | |||||||
| -0.016 | 0.828 | 0.113 | 0.865 | 0.154 | 0.715 | -0.145 | 0.797 | 0.364 | 0.666 | |
| 0.84 | 0.17 | 0.06 | 0.08 |
Results, expressed as N-fold differences in target gene expression relative to the mouse and human TBP genes (both the mouse and human TBP transcripts) and termed “Ntarget”, were determined as Ntarget = 2∆Ctsample , where the ∆Ct value of the sample was determined by subtracting the average Ct value of target gene (human or mouse) from the average Ct value of ‘Total-TBP’ gene). The Ntarget values of the tumor samples were subsequently normalized such that the value for mRNA level was 1 when Ct=35. Target mRNA levels that were total absence or very low (Ct > 38) in tumor samples were scored ‘0’ for non expressed. As for calculation of % of mouse cells, specific mouse Tbp gene expression and the expression of both the mouse and the human TBP genes were studied by real-time qRT-PCR using the mouse Tbp as target gene and the ‘Total-TBP’ as endogenous RNA control. Results, expressed as N-fold differences in specific mouse Tbp gene expression (using mouse Tbp primers) relative to the sum of the mouse and the human TBP gene expression (using ‘Total-TBP’ primers), termed NMm-TBP, are determined by theformula: NMm-TBP = 2DCtsample. The DCt value of the sample is determined by subtracting the Ct value of the mouse TBP gene from the Ct value of the Total TBP gene. The NMm-TBP values of the samples are subsequently normalized such that the median of NMm-TBP values of 4 mouse tissues was 100. As TBP is a ubiquitously expressed housekeeping gene, showing similar expression in our human and mouse tissues (Ct=27 for 5 ng cDNA), the final result (normalized NMm-TBP value) gives an estimate of the proportion of mouse cell content for a given xenograft. 1Spearman correlation coefficient, 2p value of Spearman rank correlation test, in bold when p is significant.
Figure 1Gene expression levels of mouse endothelial markers and in the 8 human tumor xenograft types. Box-and-whisker diagrams showing the expression of mouse endothelial marker genes (mCd31, mCd105, mVegfr1, mVegfr2), plot on left Y axis and hVEGFA gene plot on right Y axis. The box indicates the interquartile range, the centre horizontal line the median value and the black dots are outliers.
Figure 2Variations of human (a), (b), (c) and (d) gene expression within the 8 human tumor xenograft types. Results are expressed for each cancer type as percent of PDX specimens showing normalized Ntarget values in the following categories: no expression, 0 to 1, 1 to 10, 10 to 100 or more than 100.
Target mRNA levels in 2 NSCLC xenografts after bevacizumab treatment
| | |||||||
|---|---|---|---|---|---|---|---|
| 18.1 (7.34-43.1) | 57.6 (31.8-64.2) | 2.38 (0.00-9.21) | 6.70 (2.41-17.1) NS | | |||
| | 863 (686-1790) | 578 (483-847) | 2 334 (1 538-4 363) | 856 (699-980) | |||
| 29.1 (3.59-47.2) | 38.2 (15.1-71.4) | NS | 57.64 (38.8-90.86) | 57.50 (47.2 - 84.4) | NS | ||
| | 619 (580-1098) | 414 (328-619) | 1 519 (1120-1813) | 821 (610-860) | |||
| 59.6 (56.7-90.6) | 88.9 (62.3-118) | NS | 3.84 (0.00-24.8) | 9.11 (3.87-20.3) | NS | ||
| | 589 (470-909) | 274 (212-362) | 938 (633-1163) | 305 (216-344) | |||
| 507 (361-622) | 545 (488-643) | NS | 220 (140-274) | 574 (213-834) | NS | ||
| | 466 (386-800) | 204 (196-298) | 1 175 (698-1 211) | 328 (316-349) | |||
| 20 503 (19162-24600) | 32 160 (30 331-35 680) | 11 984 (5 368-13 961) | 12 235 (7 088-14 042) | NS | |||
| 160 (119-495) | 307 (184-614) | NS | 262 (170-680) | 267 (240-360) | NS | ||
Results are expressed as normalized N-fold differences in target gene expression relative to the ‘Total-TBP’ expression. These Ntarget values of the tumor samples were normalized such that the value for the ’basal mRNA level‘ (Ct = 35) was 1Target mRNA levels that were total absence or very low (Ct > 38) in tumor samples were scored ‘0’ for non expressed.
Median and range in () are given for each gene in the different experimental conditions. 1Mann Whitney Test; NS, not significant; in bold, significant.