Literature DB >> 24619609

Assignments of RNase A by ADAPT-NMR and enhancer.

Marco Tonelli1, Chelcie H Eller, Kiran K Singarapu, Woonghee Lee, Arash Bahrami, William M Westler, Ronald T Raines, John L Markley.   

Abstract

We report here backbone (1)H and (15)N assignments for ribonuclease A obtained by using ADAPT-NMR, a fully-automated approach for combined data collection, spectral analysis and resonance assignment. ADAPT-NMR was able to assign 98% of the resonances with 93% agreement with traditional data collection and assignment. Further refinement of the automated results with ADAPT-NMR enhancer led to complete (100%) assignments with 96% agreement with assignments by the traditional approach.

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Year:  2014        PMID： 24619609      PMCID： PMC4162851          DOI： 10.1007/s12104-014-9549-z

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN： 1874-270X            Impact factor:   0.746


  14 in total

1.  Ribonuclease A.

Authors:  Ronald T. Raines
Journal:  Chem Rev       Date:  1998-05-07       Impact factor: 60.622

2.  What's in your buffer? Solute altered millisecond motions detected by solution NMR.

Authors:  Madeline Wong; Gennady Khirich; J Patrick Loria
Journal:  Biochemistry       Date:  2013-08-30       Impact factor: 3.162

3.  Stepwise deamidation of ribonuclease A at five sites determined by top down mass spectrometry.

Authors:  Vlad Zabrouskov; Xuemei Han; Ervin Welker; Huili Zhai; Cheng Lin; Klaas J van Wijk; Harold A Scheraga; Fred W McLafferty
Journal:  Biochemistry       Date:  2006-01-24       Impact factor: 3.162

4.  NMR structural analysis of an analog of an intermediate formed in the rate-determining step of one pathway in the oxidative folding of bovine pancreatic ribonuclease A: automated analysis of 1H, 13C, and 15N resonance assignments for wild-type and [C65S, C72S] mutant forms.

Authors:  S Shimotakahara; C B Rios; J H Laity; D E Zimmerman; H A Scheraga; G T Montelione
Journal:  Biochemistry       Date:  1997-06-10       Impact factor: 3.162

5.  Rational design and evaluation of mammalian ribonuclease cytotoxins.

Authors:  Jo E Lomax; Chelcie H Eller; Ronald T Raines
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

6.  Expression of wild-type and mutant bovine pancreatic ribonuclease A in Escherichia coli.

Authors:  J H Laity; S Shimotakahara; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1993-01-15       Impact factor: 11.205

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Tissue-specific expression of pancreatic-type RNases and RNase inhibitor in humans.

Authors:  J Futami; Y Tsushima; Y Murato; H Tada; J Sasaki; M Seno; H Yamada
Journal:  DNA Cell Biol       Date:  1997-04       Impact factor: 3.311

9.  Mapping, phylogenetic and expression analysis of the RNase (RNase A) locus in cattle.

Authors:  Thomas T Wheeler; Nauman J Maqbool; Sandeep K Gupta
Journal:  J Mol Evol       Date:  2012-05-05       Impact factor: 2.395

10.  ADAPT-NMR Enhancer: complete package for reduced dimensionality in protein NMR spectroscopy.

Authors:  Woonghee Lee; Arash Bahrami; John L Markley
Journal:  Bioinformatics       Date:  2012-12-07       Impact factor: 6.937
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  1 in total

1.  Human Cancer Antigen Globo H Is a Cell-Surface Ligand for Human Ribonuclease 1.

Authors:  Chelcie H Eller; Tzu-Yuan Chao; Kiran K Singarapu; Ouathek Ouerfelli; Guangbin Yang; John L Markley; Samuel J Danishefsky; Ronald T Raines
Journal:  ACS Cent Sci       Date:  2015-07-13       Impact factor: 14.553
  1 in total

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