Literature DB >> 24619230

TET proteins and 5-methylcytosine oxidation in the immune system.

Ageliki Tsagaratou1, Anjana Rao2.   

Abstract

DNA methylation in the form of 5-methylcytosine (5mC) is essential for normal development in mammals and influences a variety of biological processes, including transcriptional regulation, imprinting, and the maintenance of genomic stability. The recent discovery of TET proteins, which oxidize 5mC to 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxylcytosine, has changed our understanding of the process of DNA demethylation. Here, we summarize our current knowledge of the roles of DNA methylation and TET proteins in cell differentiation and function. The intensive research on this subject has so far focused primarily on embryonic stem (ES) cells and neurons. In addition, we summarize what is known about DNA methylation in T-cell function.
Copyright © 2013 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2014        PMID: 24619230      PMCID: PMC4631521          DOI: 10.1101/sqb.2013.78.020248

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN: 0091-7451


  85 in total

1.  Differential requirements for Runx proteins in CD4 repression and epigenetic silencing during T lymphocyte development.

Authors:  Ichiro Taniuchi; Motomi Osato; Takeshi Egawa; Mary Jean Sunshine; Suk Chul Bae; Toshihisa Komori; Yoshiaki Ito; Dan R Littman
Journal:  Cell       Date:  2002-11-27       Impact factor: 41.582

2.  Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability.

Authors:  Daniel Cortázar; Christophe Kunz; Jim Selfridge; Teresa Lettieri; Yusuke Saito; Eilidh MacDougall; Annika Wirz; David Schuermann; Angelika L Jacobs; Fredy Siegrist; Roland Steinacher; Josef Jiricny; Adrian Bird; Primo Schär
Journal:  Nature       Date:  2011-01-30       Impact factor: 49.962

3.  TET1, a member of a novel protein family, is fused to MLL in acute myeloid leukemia containing the t(10;11)(q22;q23).

Authors:  R B Lorsbach; J Moore; S Mathew; S C Raimondi; S T Mukatira; J R Downing
Journal:  Leukemia       Date:  2003-03       Impact factor: 11.528

4.  TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.

Authors:  Kristine Williams; Jesper Christensen; Marianne Terndrup Pedersen; Jens V Johansen; Paul A C Cloos; Juri Rappsilber; Kristian Helin
Journal:  Nature       Date:  2011-04-13       Impact factor: 49.962

Review 5.  Plasticity of CD4+ T cell lineage differentiation.

Authors:  Liang Zhou; Mark M W Chong; Dan R Littman
Journal:  Immunity       Date:  2009-05       Impact factor: 31.745

6.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

7.  Crystal structure of TET2-DNA complex: insight into TET-mediated 5mC oxidation.

Authors:  Lulu Hu; Ze Li; Jingdong Cheng; Qinhui Rao; Wei Gong; Mengjie Liu; Yujiang Geno Shi; Jiayu Zhu; Ping Wang; Yanhui Xu
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

8.  Comprehensive methylome map of lineage commitment from haematopoietic progenitors.

Authors:  Hong Ji; Lauren I R Ehrlich; Jun Seita; Peter Murakami; Akiko Doi; Paul Lindau; Hwajin Lee; Martin J Aryee; Rafael A Irizarry; Kitai Kim; Derrick J Rossi; Matthew A Inlay; Thomas Serwold; Holger Karsunky; Lena Ho; George Q Daley; Irving L Weissman; Andrew P Feinberg
Journal:  Nature       Date:  2010-08-15       Impact factor: 49.962

9.  Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain.

Authors:  Carina Frauer; Thomas Hoffmann; Sebastian Bultmann; Valentina Casa; M Cristina Cardoso; Iris Antes; Heinrich Leonhardt
Journal:  PLoS One       Date:  2011-06-22       Impact factor: 3.240

Review 10.  Mapping recently identified nucleotide variants in the genome and transcriptome.

Authors:  Chun-Xiao Song; Chengqi Yi; Chuan He
Journal:  Nat Biotechnol       Date:  2012-11       Impact factor: 54.908

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  18 in total

1.  Dynamic switching of active promoter and enhancer domains regulates Tet1 and Tet2 expression during cell state transitions between pluripotency and differentiation.

Authors:  Abhishek Sohni; Michela Bartoccetti; Rita Khoueiry; Lien Spans; Joris Vande Velde; Linde De Troyer; Kirthi Pulakanti; Frank Claessens; Sridhar Rao; Kian Peng Koh
Journal:  Mol Cell Biol       Date:  2015-01-12       Impact factor: 4.272

2.  Differential regulation of genomic imprinting by TET proteins in embryonic stem cells.

Authors:  Lizhi Liu; Shi-Qing Mao; Chelsea Ray; Yu Zhang; Fong T Bell; Sheau-Fang Ng; Guo-Liang Xu; Xiajun Li
Journal:  Stem Cell Res       Date:  2015-08-29       Impact factor: 2.020

3.  17β-Estradiol and 17α-Ethinyl Estradiol Exhibit Immunologic and Epigenetic Regulatory Effects in NZB/WF1 Female Mice.

Authors:  Rujuan Dai; Michael R Edwards; Bettina Heid; S Ansar Ahmed
Journal:  Endocrinology       Date:  2019-01-01       Impact factor: 4.736

4.  TET proteins regulate the lineage specification and TCR-mediated expansion of iNKT cells.

Authors:  Ageliki Tsagaratou; Edahí González-Avalos; Sini Rautio; James P Scott-Browne; Susan Togher; William A Pastor; Ellen V Rothenberg; Lukas Chavez; Harri Lähdesmäki; Anjana Rao
Journal:  Nat Immunol       Date:  2016-11-21       Impact factor: 25.606

5.  Degradation of 5hmC-marked stalled replication forks by APE1 causes genomic instability.

Authors:  Suhas S Kharat; Xia Ding; Divya Swaminathan; Akshey Suresh; Manish Singh; Satheesh K Sengodan; Sandra Burkett; Hanna Marks; Chinmayi Pamala; Yafeng He; Stephen D Fox; Eugen C Buehler; Kathrin Muegge; Scott E Martin; Shyam K Sharan
Journal:  Sci Signal       Date:  2020-08-18       Impact factor: 8.192

6.  Dissecting the dynamic changes of 5-hydroxymethylcytosine in T-cell development and differentiation.

Authors:  Ageliki Tsagaratou; Tarmo Äijö; Chan-Wang J Lio; Xiaojing Yue; Yun Huang; Steven E Jacobsen; Harri Lähdesmäki; Anjana Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-28       Impact factor: 11.205

Review 7.  Deciphering the multifaceted roles of TET proteins in T-cell lineage specification and malignant transformation.

Authors:  Ageliki Tsagaratou
Journal:  Immunol Rev       Date:  2021-01-07       Impact factor: 12.988

8.  Control of Foxp3 stability through modulation of TET activity.

Authors:  Xiaojing Yue; Sara Trifari; Tarmo Äijö; Ageliki Tsagaratou; William A Pastor; Jorge A Zepeda-Martínez; Chan-Wang J Lio; Xiang Li; Yun Huang; Pandurangan Vijayanand; Harri Lähdesmäki; Anjana Rao
Journal:  J Exp Med       Date:  2016-02-22       Impact factor: 14.307

9.  A mutation in the tuft mouse disrupts TET1 activity and alters the expression of genes that are crucial for neural tube closure.

Authors:  Keith S K Fong; Robert B Hufnagel; Vedbar S Khadka; Michael J Corley; Alika K Maunakea; Ben Fogelgren; Zubair M Ahmed; Scott Lozanoff
Journal:  Dis Model Mech       Date:  2016-03-17       Impact factor: 5.758

10.  Immune Regulator MCPIP1 Modulates TET Expression during Early Neocortical Development.

Authors:  Huihui Jiang; Xiaohui Lv; Xuepei Lei; Ying Yang; Xin Yang; Jianwei Jiao
Journal:  Stem Cell Reports       Date:  2016-08-11       Impact factor: 7.765

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