| Literature DB >> 24616844 |
Xiaomei Su1, Yindong Liu1, Jinxing Hu1, Linxian Ding2, Chaofeng Shen1.
Abstract
The screening of pollutant-degrading bacteria are limited due to most of bacteria in the natural environment cannot be cultivated. For the purpose of resuscitating and stimulating "viable but non-culturable" (VBNC) or uncultured bacteria, Micrococcus luteus proteins are more convenient and cost-effective than purified resuscitation-promoting factor (Rpf) protein. In this study, medium composition and culture conditions were optimized by using statistical experimental design and analysis to enhance protein production by M. luteus. The most important variables influencing protein production were determined using the Plackett-Burman design (PBD) and then central composite design (CCD) was adopted to optimize medium composition and culture conditions to achieve maximum protein yield. Results showed that the maximum protein yield of 25.13 mg/L (vs. 25.66 mg/L predicted) was obtained when the mineral solution, Lithium L-lactate, initial pH and incubation time were set at 1.5 ml/L, 8.75 g/L, 7.5 and 48 h, respectively. The predicated values calculated with the model were very close to the experimental values. Protein production was obviously increased with optimization fitting well with the observed fluorescence intensity. These results verified the feasibility and accuracy of this optimization strategy. This study provides promising information for exploring highly desirable pollutant-degrading microorganisms.Entities:
Keywords: Micrococcus luteus; Protein production; Response surface methodology; Resuscitation-promoting factor; Unculture bacteria
Year: 2014 PMID: 24616844 PMCID: PMC3945202 DOI: 10.1186/2193-1801-3-117
Source DB: PubMed Journal: Springerplus ISSN: 2193-1801
Plackett-Burman design matrix for 11 variables with coded values along with observed results
| Run | Code variable level | Protein yield (mg/L) | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| X1 | X2 | X3 | X4 | X5 | X6 | X7 | X8 | X9 | X10 | X11 | ||
| 1 | +1 | -1 | -1 | -1 | -1 | +1 | -1 | +1 | -1 | -1 | +1 | 13.27 ± 0.26 |
| 2 | -1 | +1 | +1 | -1 | +1 | +1 | -1 | -1 | -1 | -1 | +1 | 13.94 ± 1.57 |
| 3 | +1 | +1 | -1 | +1 | +1 | -1 | -1 | -1 | -1 | +1 | -1 | 16.42 ± 0.63 |
| 4 | +1 | -1 | +1 | +1 | -1 | -1 | -1 | -1 | +1 | -1 | +1 | 16.74 ± 0.66 |
| 5 | -1 | +1 | +1 | -1 | -1 | -1 | -1 | +1 | -1 | +1 | -1 | 11.84 ± 0.08 |
| 6 | -1 | +1 | -1 | +1 | -1 | +1 | +1 | +1 | +1 | -1 | -1 | 21.60 ± 0.85 |
| 7 | +1 | +1 | +1 | +1 | -1 | -1 | +1 | +1 | -1 | +1 | +1 | 20.05 ± 0.81 |
| 8 | +1 | +1 | -1 | -1 | +1 | +1 | -1 | +1 | +1 | -1 | -1 | 29.17 ± 0.47 |
| 9 | -1 | +1 | +1 | +1 | +1 | -1 | -1 | +1 | +1 | -1 | +1 | 24.56 ± 0.55 |
| 10 | +1 | -1 | -1 | +1 | +1 | -1 | +1 | +1 | -1 | -1 | -1 | 18.89 ± 1.44 |
| 11 | -1 | +1 | -1 | +1 | +1 | +1 | +1 | -1 | -1 | +1 | +1 | 17.70 ± 1.12 |
| 12 | -1 | -1 | +1 | -1 | +1 | -1 | +1 | +1 | +1 | +1 | -1 | 13.19 ± 1.43 |
| 13 | +1 | -1 | +1 | -1 | +1 | +1 | +1 | +1 | -1 | -1 | +1 | 13.72 ± 2.08 |
| 14 | +1 | +1 | -1 | -1 | -1 | -1 | +1 | -1 | +1 | -1 | +1 | 20.21 ± 0.67 |
| 15 | -1 | -1 | -1 | +1 | -1 | +1 | -1 | +1 | +1 | +1 | +1 | 30.25 ± 0.98 |
| 16 | -1 | -1 | +1 | +1 | -1 | +1 | +1 | -1 | -1 | -1 | -1 | 17.86 ± 1.36 |
| 17 | +1 | -1 | +1 | +1 | +1 | +1 | -1 | -1 | +1 | +1 | -1 | 14.50 ± 1.11 |
| 18 | +1 | +1 | +1 | -1 | -1 | +1 | +1 | -1 | +1 | +1 | -1 | 13.94 ± 0.78 |
| 19 | -1 | -1 | -1 | -1 | +1 | -1 | +1 | -1 | +1 | +1 | +1 | 16.97 ± 0.43 |
| 20 | -1 | -1 | -1 | -1 | -1 | -1 | -1 | -1 | -1 | -1 | -1 | 15.31 ± 0.32 |
Variables and test levels for Plackett-Burman experiment ( indicates model terms are significant)
| Code | Variable | Low lever | High lever | Protein yield (mg/L) | |
|---|---|---|---|---|---|
| (-1) | (+1) |
|
| ||
| X1 | NH4Cl (g/L) | 2 | 4 | -0.475 | 0.637 |
| X2 | KH2PO4 (g/L) | 1.4 | 2.8 | 1.433 | 0.157 |
| X3 | Mineral solution (ml/L) | 1 | 2 | -3.215 | 0.002a |
| X4 | Lithium L-lactate (g/L) | 5 | 10 | 2.987 | 0.004a |
| X5 | MgSO4 (g/L) | 0.03 | 0.06 | -0.151 | 0.88 |
| X6 | L-Methionine (g/L) | 0.02 | 0.04 | 0.89 | 0.378 |
| X7 | Inosine (g/L) | 1 | 2 | -0.899 | 0.374 |
| X8 | Initial pH | 7.5 | 9 | 2.617 | 0.013a |
| X9 | Incubation time (h) | 48 | 96 | 3.48 | 0.001a |
| X10 | Incubation temperature (°C) | 30 | 37 | -1.097 | 0.277 |
| X11 | Inculum size (%) | 2 | 4 | 1.116 | 0.269 |
Central composite design for optimizing significant variables for protein production
| Run | Mineral solution (ml/L) | Lithium L-lactate (g/L) | Initial pH | Incubation time (h) | Protein yield (mg/L) | |
|---|---|---|---|---|---|---|
| Actual value | Predicted value | |||||
| 1 | 1.5 | 7.5 | 8.25 | 72 | 20.92 ± 0.45 | 20.84 |
| 2 | 2 | 5 | 7.5 | 48 | 22.94 ± 0.23 | 22.4 |
| 3 | 1.5 | 7.5 | 8.25 | 120 | 1.53 ± 0.33 | 1.88 |
| 4 | 1 | 5 | 7.5 | 48 | 21.21 ± 0.12 | 20.16 |
| 5 | 2 | 5 | 7.5 | 96 | 13.93 ± 0.38 | 12.01 |
| 6 | 2 | 5 | 9 | 48 | 13.11 ± 0.66 | 13.32 |
| 7 | 2 | 10 | 9 | 96 | 6.71 ± 0.49 | 7.31 |
| 8 | 1.5 | 7.5 | 9.75 | 72 | 7.81 ± 0.61 | 7.51 |
| 9 | 1 | 5 | 7.5 | 96 | 9.22 ± 0.36 | 9.25 |
| 10 | 1.5 | 2.5 | 8.25 | 72 | 11.71 ± 0.76 | 13.05 |
| 11 | 2 | 10 | 9 | 48 | 17.01 ± 0.43 | 15.59 |
| 12 | 1 | 5 | 9 | 96 | 4.70 ± 0.56 | 6.38 |
| 13 | 1.5 | 7.5 | 8.25 | 72 | 20.31 ± 0.57 | 20.84 |
| 14 | 1 | 10 | 7.5 | 96 | 12.08 ± 0.30 | 11.41 |
| 15 | 1.5 | 7.5 | 8.25 | 72 | 21.03 ± 0.49 | 20.84 |
| 16 | 1.5 | 7.5 | 8.25 | 72 | 21.18 ± 1.16 | 20.84 |
| 17 | 1 | 10 | 9 | 96 | 9.00 ± 0.36 | 8.16 |
| 18 | 1 | 10 | 9 | 48 | 15.50 ± 0.89 | 16.97 |
| 19 | 1.5 | 7.5 | 8.25 | 24 | 19.58 ± 0.54 | 21.08 |
| 20 | 1.5 | 7.5 | 8.25 | 72 | 20.97 ± 0.43 | 20.84 |
| 21 | 2 | 5 | 9 | 96 | 7.32 ± 0.53 | 5.84 |
| 22 | 2 | 10 | 7.5 | 48 | 27.19 ± 0.35 | 25.05 |
| 23 | 1 | 10 | 7.5 | 48 | 23.02 ± 0.34 | 23.12 |
| 24 | 0.5 | 7.5 | 8.25 | 72 | 15.74 ± 0.34 | 15.19 |
| 25 | 2.5 | 7.5 | 8.25 | 72 | 14.17 ± 0.60 | 16.57 |
| 26 | 1.5 | 7.5 | 8.25 | 72 | 20.61 ± 0.83 | 20.84 |
| 27 | 2 | 10 | 7.5 | 96 | 13.79 ± 0.74 | 13.86 |
| 28 | 1 | 5 | 9 | 48 | 15.83 ± 1.44 | 14.38 |
| 29 | 1.5 | 7.5 | 6.75 | 72 | 17.69 ± 0.50 | 19.84 |
| 30 | 1.5 | 12.5 | 8.25 | 72 | 16.98 ± 0.31 | 17.48 |
ANOVA for response surface quadratic model for protein production
| Factors | Statistics | ||||
|---|---|---|---|---|---|
| Sum of squares | df | Mean square |
|
| |
| Model | 1075.47 | 14 | 76.82 | 30.11 | < 0.0001 |
| X3 | 2.88 | 1 | 2.88 | 1.13 | 0.3051 |
| X4 | 29.42 | 1 | 29.42 | 11.53 | 0.0040 |
| X8 | 227.79 | 1 | 227.79 | 89.29 | < 0.0001 |
| X9 | 552.46 | 1 | 552.46 | 216.56 | < 0.0001 |
| X3 X4 | 0.10 | 1 | 0.10 | 0.038 | 0.8475 |
| X3 X8 | 10.90 | 1 | 10.90 | 4.27 | 0.0565 |
| X3 X9 | 0.27 | 1 | 0.27 | 0.10 | 0.7507 |
| X4 X8 | 0.15 | 1 | 0.15 | 0.06 | 0.8147 |
| X4 X9 | 0.64 | 1 | 0.645 | 0.25 | 0.6225 |
| X8 X9 | 8.43 | 1 | 8.43 | 3.30 | 0.0892 |
|
| 42.09 | 1 | 42.09 | 16.50 | 0.0010 |
|
| 53.19 | 1 | 53.19 | 20.85 | 0.0004 |
|
| 87.85 | 1 | 87.85 | 34.44 | < 0.0001 |
|
| 150.01 | 1 | 150.01 | 58.80 | < 0.0001 |
| Residual | 38.27 | 15 | 2.55 | ||
| Pure error | 0.51 | 5 | 0.10 | ||
| Cor total | 1113.73 | 29 | |||
Coefficient of determination (R2 = 0.966), R2(predict) = 0.804, R2(adjust) = 0.934.
Figure 1Response surface plot showing interactive effect of selected variables on protein yield by (A) Mineral solution and Lithium L-lactate, (B) Mineral solution and initial pH, (C) Mineral solution and incubation time, (D) Lithium L-lactate and initial pH, (E) Lithium L-lactate and incubation time, (F) Initial pH and incubation time.
Figure 2Contour plot showing interactive effect of selected variables on protein yield by (A) Mineral solution and Lithium L-lactate, (B) Mineral solution and initial pH, (C) Mineral solution and incubation time, (D) Lithium L-lactate and initial pH, (E) Lithium L-lactate and incubation time, (F) Initial pH and incubation time.
Figure 3Emission fluorescence spectra of protein yield in culture supernatant with and without optimization.
Figure 4Fluorescence spectra of culture supernatant from with and without optimization. (A) Without optimization, (B) With optimization, Peak A: protein-like substances, Peak B: humic-like substances.