Literature DB >> 24615639

Design of a reaction field using a linear-combination-based isotropic periodic sum method.

Kazuaki Z Takahashi1.   

Abstract

In our previous study (Takahashi et al., J. Chem. Theory Comput. 2012, 8, 4503), we developed the linear-combination-based isotropic periodic sum (LIPS) method. The LIPS method is based on the extended isotropic periodic sum theory that produces a ubiquitous interaction potential function to estimate homogeneous and heterogeneous systems. The LIPS theory also provides the procedure to design a periodic reaction field. To demonstrate this, in the present work, a novel reaction field of the LIPS method was developed. The novel reaction field was labeled LIPS-SW, because it provides an interaction potential function with a shape that resembles that of the switch function method. To evaluate the ability of the LIPS-SW method to describe in homogeneous and heterogeneous systems, we carried out molecular dynamics (MD) simulations of bulk water and water-vapor interfacial systems using the LIPS-SW method. The results of these simulations show that the LIPS-SW method gives higher accuracy than the conventional interaction potential function of the LIPS method. The accuracy of simulating water-vapor interfacial systems was greatly improved, while that of bulk water systems was maintained using the LIPS-SW method. We conclude that the LIPS-SW method shows great potential for high-accuracy, high-performance computing to allow large scale MD simulations. © 2014 Wiley Periodicals, Inc.
Copyright © 2014 Wiley Periodicals, Inc.

Entities:  

Keywords:  fast multipole method; isotropic periodic sum method; long-range interactions; molecular dynamics simulation; reaction field

Mesh:

Substances:

Year:  2014        PMID: 24615639     DOI: 10.1002/jcc.23562

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  3 in total

1.  Critical test of isotropic periodic sum techniques with group-based cut-off schemes.

Authors:  Takuma Nozawa; Kenji Yasuoka; Kazuaki Z Takahashi
Journal:  Sci Rep       Date:  2018-03-08       Impact factor: 4.379

2.  A Virtual Mixture Approach to the Study of Multistate Equilibrium: Application to Constant pH Simulation in Explicit Water.

Authors:  Xiongwu Wu; Bernard R Brooks
Journal:  PLoS Comput Biol       Date:  2015-10-27       Impact factor: 4.475

3.  A fast and accurate computational method for the linear-combination-based isotropic periodic sum.

Authors:  Kazuaki Z Takahashi; Takuma Nozawa; Kenji Yasuoka
Journal:  Sci Rep       Date:  2018-08-08       Impact factor: 4.379

  3 in total

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