Literature DB >> 24614740

Direct detection of single nucleotide polymorphism (SNP) by the TaqMan PCR assay using dried saliva on water-soluble paper and hair-roots, without DNA extraction.

Mariko Hayashida1, Tomoko Ota, Minori Ishii, Kyoko Iwao-Koizumi, Shigenori Murata, Kenji Kinoshita.   

Abstract

We have developed a new method for directly using unprocessed biological specimens as templates for the TaqMan assay. DNA extraction and purification had been believed to be required for the assay, but our new method could avoid hindering fluorescence detection, even if the templates were used directly. Saliva was needed to be put on water-soluble paper and dried, and hairs were cut to be about 10 mm long. This method could reduce both the time and effort involved, and also the risk of contamination. It should prove to be very valuable for genetic diagnoses in various fields.

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Year:  2014        PMID: 24614740     DOI: 10.2116/analsci.30.427

Source DB:  PubMed          Journal:  Anal Sci        ISSN: 0910-6340            Impact factor:   2.081


  8 in total

1.  Risk assessment of metachronous squamous cell carcinoma after endoscopic resection for esophageal carcinoma based on the genetic polymorphisms of alcoholdehydrogense-1B aldehyde dehydrogenase-2: temperance reduces the risk.

Authors:  Satoshi Abiko; Yuichi Shimizu; Shuichi Miyamoto; Marin Ishikawa; Kana Matsuda; Momoko Tsuda; Takeshi Mizushima; Keiko Yamamoto; Shoko Ono; Takahiko Kudo; Kota Ono; Naoya Sakamoto
Journal:  J Gastroenterol       Date:  2018-02-08       Impact factor: 7.527

2.  The detection and identification of saliva in forensic samples by RT-LAMP.

Authors:  Li-Chin Tsai; Chih-Wen Su; James Chun-I Lee; Yu-Sheng Lu; Hsuan-Chen Chen; Yu-Chih Lin; Adrian Linacre; Hsing-Mei Hsieh
Journal:  Forensic Sci Med Pathol       Date:  2018-07-30       Impact factor: 2.007

3.  Relationships of alcohol dehydrogenase 1B (ADH1B) and aldehyde dehydrogenase 2 (ALDH2) genotypes with alcohol sensitivity, drinking behavior and problem drinking in Japanese older men.

Authors:  Marowa Hashimoto; Masutaka Watanabe; Yuji Uematsu; Sonomi Hattori; Nobuyuki Miyai; Miyoko Utsumi; Mayumi Oka; Mariko Hayashida; Kenji Kinoshita; Mikio Arita; Tatsuya Takeshita
Journal:  Environ Health Prev Med       Date:  2016-01-29       Impact factor: 3.674

4.  Combination analysis in genetic polymorphisms of drug-metabolizing enzymes CYP1A2, CYP2C9, CYP2C19, CYP2D6 and CYP3A5 in the Japanese population.

Authors:  Tomoko Ota; Yuka Kamada; Mariko Hayashida; Kyoko Iwao-Koizumi; Shigenori Murata; Kenji Kinoshita
Journal:  Int J Med Sci       Date:  2015-01-01       Impact factor: 3.738

5.  Variant Aldehyde Dehydrogenase 2 (ALDH2*2) Is a Risk Factor for Coronary Spasm and ST-Segment Elevation Myocardial Infarction.

Authors:  Yuji Mizuno; Seiji Hokimoto; Eisaku Harada; Kenji Kinoshita; Kazuko Nakagawa; Michihiro Yoshimura; Hisao Ogawa; Hirofumi Yasue
Journal:  J Am Heart Assoc       Date:  2016-05-06       Impact factor: 5.501

6.  Relationships of early esophageal cancer with human papillomavirus and alcohol metabolism.

Authors:  Masaki Inoue; Yuichi Shimizu; Marin Ishikawa; Satoshi Abiko; Yoshihiko Shimoda; Ikko Tanaka; Sayoko Kinowaki; Masayoshi Ono; Keiko Yamamoto; Shoko Ono; Naoya Sakamoto
Journal:  World J Gastroenterol       Date:  2020-10-21       Impact factor: 5.742

7.  Detection of Spinal Muscular Atrophy Patients Using Dried Saliva Spots.

Authors:  Yogik Onky Silvana Wijaya; Hisahide Nishio; Emma Tabe Eko Niba; Kentaro Okamoto; Haruo Shintaku; Yasuhiro Takeshima; Toshio Saito; Masakazu Shinohara; Hiroyuki Awano
Journal:  Genes (Basel)       Date:  2021-10-14       Impact factor: 4.096

8.  Ecophysiological consequences of alcoholism on human gut microbiota: implications for ethanol-related pathogenesis of colon cancer.

Authors:  Atsuki Tsuruya; Akika Kuwahara; Yuta Saito; Haruhiko Yamaguchi; Takahisa Tsubo; Shogo Suga; Makoto Inai; Yuichi Aoki; Seiji Takahashi; Eri Tsutsumi; Yoshihide Suwa; Hidetoshi Morita; Kenji Kinoshita; Yukari Totsuka; Wataru Suda; Kenshiro Oshima; Masahira Hattori; Takeshi Mizukami; Akira Yokoyama; Takefumi Shimoyama; Toru Nakayama
Journal:  Sci Rep       Date:  2016-06-13       Impact factor: 4.379

  8 in total

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