Literature DB >> 24613822

HIV viral RNA extraction in wax immiscible filtration assisted by surface tension (IFAST) devices.

Scott M Berry1, Alex J LaVanway2, Hannah M Pezzi2, David J Guckenberger2, Meghan A Anderson2, Jennifer M Loeb2, David J Beebe2.   

Abstract

The monitoring of viral load is critical for proper management of antiretroviral therapy for HIV-positive patients. Unfortunately, in the developing world, significant economic and geographical barriers exist, limiting access to this test. The complexity of current viral load assays makes them expensive and their access limited to advanced facilities. We attempted to address these limitations by replacing conventional RNA extraction, one of the essential processes in viral load quantitation, with a simplified technique known as immiscible filtration assisted by surface tension (IFAST). Furthermore, these devices were produced via the embossing of wax, enabling local populations to produce and dispose of their own devices with minimal training or infrastructure, potentially reducing the total assay cost. In addition, IFAST can be used to reduce cold chain dependence during transportation. Viral RNA extracted from raw samples stored at 37°C for 1 week exhibited nearly complete degradation. However, IFAST-purified RNA could be stored at 37°C for 1 week without significant loss. These data suggest that RNA isolated at the point of care (eg, in a rural clinic) via IFAST could be shipped to a central laboratory for quantitative RT-PCR without a cold chain. Using this technology, we have demonstrated accurate and repeatable measurements of viral load on samples with as low as 50 copies per milliliter of sample.
Copyright © 2014 American Society for Investigative Pathology and the Association for Molecular Pathology. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24613822      PMCID: PMC4715211          DOI: 10.1016/j.jmoldx.2014.01.004

Source DB:  PubMed          Journal:  J Mol Diagn        ISSN: 1525-1578            Impact factor:   5.568


  19 in total

1.  Understanding wax printing: a simple micropatterning process for paper-based microfluidics.

Authors:  Emanuel Carrilho; Andres W Martinez; George M Whitesides
Journal:  Anal Chem       Date:  2009-08-15       Impact factor: 6.986

Review 2.  Alternatives for the treatment and disposal of healthcare wastes in developing countries.

Authors:  L F Diaz; G M Savage; L L Eggerth
Journal:  Waste Manag       Date:  2005       Impact factor: 7.145

3.  Requirements for high impact diagnostics in the developing world.

Authors:  Mickey Urdea; Laura A Penny; Stuart S Olmsted; Maria Y Giovanni; Peter Kaspar; Andrew Shepherd; Penny Wilson; Carol A Dahl; Steven Buchsbaum; Gerry Moeller; Deborah C Hay Burgess
Journal:  Nature       Date:  2006-11-23       Impact factor: 49.962

4.  Impact of HIV-1 genetic diversity on plasma HIV-1 RNA Quantification: usefulness of the Agence Nationale de Recherches sur le SIDA second-generation long terminal repeat-based real-time reverse transcriptase polymerase chain reaction test.

Authors:  François Rouet; Marie-Laure Chaix; Eric Nerrienet; Nicole Ngo-Giang-Huong; Jean-Christophe Plantier; Marianne Burgard; Martine Peeters; Florence Damond; Didier Koumavi Ekouevi; Philippe Msellati; Laurent Ferradini; Sandra Rukobo; Valérie Maréchal; Nilda Schvachsa; Lahcen Wakrim; Christian Rafalimanana; Benjamin Rakotoambinina; Jean-Paul Viard; Jean-Marie Seigneurin; Christine Rouzioux
Journal:  J Acquir Immune Defic Syndr       Date:  2007-08-01       Impact factor: 3.731

5.  Droplet-based gene expression analysis using a device with magnetic force-based-droplet-handling system.

Authors:  Mina Okochi; Hiroyoshi Tsuchiya; Fumitaka Kumazawa; Mitsuhiro Shikida; Hiroyuki Honda
Journal:  J Biosci Bioeng       Date:  2009-08-12       Impact factor: 2.894

6.  A Combined Fabrication and Instrumentation Platform for Sample Preparation.

Authors:  David J Guckenberger; Peter C Thomas; Jacob Rothbauer; Alex J LaVanway; Meghan Anderson; Dan Gilson; Kevin Fawcett; Tristan Berto; Kevin Barrett; David J Beebe; Scott M Berry
Journal:  J Lab Autom       Date:  2014-01-08

7.  One-step purification of nucleic acid for gene expression analysis via Immiscible Filtration Assisted by Surface Tension (IFAST).

Authors:  Scott M Berry; Elaine T Alarid; David J Beebe
Journal:  Lab Chip       Date:  2011-03-21       Impact factor: 6.799

8.  Fabrication of biofunctionalized microfluidic structures by low-temperature wax bonding.

Authors:  María Díaz-González; Antoni Baldi
Journal:  Anal Chem       Date:  2012-08-31       Impact factor: 6.986

9.  Matrix mediates the functional link between human immunodeficiency virus type 1 RNA nuclear export elements and the assembly competency of Gag in murine cells.

Authors:  Nathan M Sherer; Chad M Swanson; Stelios Papaioannou; Michael H Malim
Journal:  J Virol       Date:  2009-06-17       Impact factor: 5.103

10.  LTR real-time PCR for HIV-1 DNA quantitation in blood cells for early diagnosis in infants born to seropositive mothers treated in HAART area (ANRS CO 01).

Authors:  Véronique Avettand-Fènoël; Marie-Laure Chaix; Stéphane Blanche; Marianne Burgard; Corinne Floch; Kadidia Toure; Marie-Christine Allemon; Josiane Warszawski; Christine Rouzioux
Journal:  J Med Virol       Date:  2009-02       Impact factor: 2.327

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  11 in total

Review 1.  Miniaturized devices for point of care molecular detection of HIV.

Authors:  Michael Mauk; Jinzhao Song; Haim H Bau; Robert Gross; Frederic D Bushman; Ronald G Collman; Changchun Liu
Journal:  Lab Chip       Date:  2017-01-31       Impact factor: 6.799

2.  Centrifugation-Assisted Immiscible Fluid Filtration for Dual-Bioanalyte Extraction.

Authors:  Duane S Juang; Scott M Berry; Chao Li; Joshua M Lang; David J Beebe
Journal:  Anal Chem       Date:  2019-08-26       Impact factor: 6.986

3.  A lab-on-a-chip platform for integrated extraction and detection of SARS-CoV-2 RNA in resource-limited settings.

Authors:  Pablo Rodriguez-Mateos; Bongkot Ngamsom; Cheryl Walter; Charlotte E Dyer; Jesse Gitaka; Alexander Iles; Nicole Pamme
Journal:  Anal Chim Acta       Date:  2021-06-14       Impact factor: 6.558

Review 4.  Point-of-care viral load tests to detect high HIV viral load in people living with HIV/AIDS attending health facilities.

Authors:  Eleanor A Ochodo; Easter Elizabeth Olwanda; Jonathan J Deeks; Sue Mallett
Journal:  Cochrane Database Syst Rev       Date:  2022-03-10

Review 5.  Molecular oncology testing in resource-limited settings.

Authors:  Margaret L Gulley; Douglas R Morgan
Journal:  J Mol Diagn       Date:  2014-09-19       Impact factor: 5.568

6.  Vortex- and Centrifugation-Free Extraction of HIV-1 RNA.

Authors:  Rachel N Deraney; Derek Troiano; Richard Joseph; Soya S Sam; Angela M Caliendo; Anubhav Tripathi
Journal:  Mol Diagn Ther       Date:  2019-06       Impact factor: 4.476

7.  AirJump: Using Interfaces to Instantly Perform Simultaneous Extractions.

Authors:  Scott M Berry; Hannah M Pezzi; Alex J LaVanway; David J Guckenberger; Meghan A Anderson; David J Beebe
Journal:  ACS Appl Mater Interfaces       Date:  2016-06-10       Impact factor: 9.229

Review 8.  Simple Approaches to Minimally-Instrumented, Microfluidic-Based Point-of-Care Nucleic Acid Amplification Tests.

Authors:  Michael G Mauk; Jinzhao Song; Changchun Liu; Haim H Bau
Journal:  Biosensors (Basel)       Date:  2018-02-26

9.  Isolating Influenza RNA from Clinical Samples Using Microfluidic Oil-Water Interfaces.

Authors:  Francis R Cui; Jingjing Wang; Steven M Opal; Anubhav Tripathi
Journal:  PLoS One       Date:  2016-02-17       Impact factor: 3.240

10.  Using Exclusion-Based Sample Preparation (ESP) to Reduce Viral Load Assay Cost.

Authors:  Scott M Berry; Hannah M Pezzi; Eram D Williams; Jennifer M Loeb; David J Guckenberger; Alex J Lavanway; Alice A Puchalski; Cissy M Kityo; Peter N Mugyenyi; Franklin M Graziano; David J Beebe
Journal:  PLoS One       Date:  2015-12-02       Impact factor: 3.240

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