Literature DB >> 24610724

A distal CCAAT/NUCLEAR FACTOR Y complex promotes chromatin looping at the FLOWERING LOCUS T promoter and regulates the timing of flowering in Arabidopsis.

Shuanghe Cao1, Roderick W Kumimoto, Nerina Gnesutta, Alessandra M Calogero, Roberto Mantovani, Ben F Holt.   

Abstract

For many plant species, reproductive success relies on the proper timing of flowering, and photoperiod provides a key environmental input. Photoperiod-dependent flowering depends on timely expression of FLOWERING LOCUS T (FT); however, the coordination of various cis-regulatory elements in the FT promoter is not well understood. Here, we provide evidence that long-distance chromatin loops bring distal enhancer elements into close association with the proximal promoter elements bound by CONSTANS (CO). Additionally, we show that NUCLEAR FACTOR Y (NF-Y) binds a CCAAT box in the distal enhancer element and that CCAAT disruption dramatically reduces FT promoter activity. Thus, we propose the recruitment model of photoperiod-dependent flowering where NF-Y complexes, bound at the FT distal enhancer element, help recruit CO to proximal cis-regulatory elements and initiate the transition to reproductive growth.

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Year:  2014        PMID: 24610724      PMCID: PMC4001365          DOI: 10.1105/tpc.113.120352

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  55 in total

1.  The flowering time regulator CONSTANS is recruited to the FLOWERING LOCUS T promoter via a unique cis-element.

Authors:  Shiv B Tiwari; Yu Shen; Han-Chang Chang; Yanli Hou; Amanda Harris; Siu Fong Ma; Megan McPartland; Graham J Hymus; Luc Adam; Colleen Marion; Alemu Belachew; Peter P Repetti; T Lynne Reuber; Oliver J Ratcliffe
Journal:  New Phytol       Date:  2010-04-12       Impact factor: 10.151

2.  CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis.

Authors:  P Suárez-López; K Wheatley; F Robson; H Onouchi; F Valverde; G Coupland
Journal:  Nature       Date:  2001-04-26       Impact factor: 49.962

3.  Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

Authors:  Hélène Hagège; Petra Klous; Caroline Braem; Erik Splinter; Job Dekker; Guy Cathala; Wouter de Laat; Thierry Forné
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 4.  Photoperiodic control of flowering: not only by coincidence.

Authors:  Takato Imaizumi; Steve A Kay
Journal:  Trends Plant Sci       Date:  2006-10-10       Impact factor: 18.313

5.  CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis.

Authors:  Stephan Wenkel; Franziska Turck; Kamy Singer; Lionel Gissot; José Le Gourrierec; Alon Samach; George Coupland
Journal:  Plant Cell       Date:  2006-11-30       Impact factor: 11.277

Review 6.  The multifaceted roles of FLOWERING LOCUS T in plant development.

Authors:  P A Pin; O Nilsson
Journal:  Plant Cell Environ       Date:  2012-07-15       Impact factor: 7.228

7.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

8.  Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors.

Authors:  Akiko Yamamoto; Yasuaki Kagaya; Ryoko Toyoshima; Michiko Kagaya; Shin Takeda; Tsukaho Hattori
Journal:  Plant J       Date:  2009-02-03       Impact factor: 6.417

9.  Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization.

Authors:  Max Haring; Sascha Offermann; Tanja Danker; Ina Horst; Christoph Peterhansel; Maike Stam
Journal:  Plant Methods       Date:  2007-09-24       Impact factor: 4.993

10.  FT protein acts as a long-range signal in Arabidopsis.

Authors:  Katja E Jaeger; Philip A Wigge
Journal:  Curr Biol       Date:  2007-05-31       Impact factor: 10.834

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  79 in total

1.  A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana.

Authors:  Ken S Heyndrickx; Jan Van de Velde; Congmao Wang; Detlef Weigel; Klaas Vandepoele
Journal:  Plant Cell       Date:  2014-10-31       Impact factor: 11.277

2.  A spatiotemporally regulated transcriptional complex underlies heteroblastic development of leaf hairs in Arabidopsis thaliana.

Authors:  Long Wang; Chuan-Miao Zhou; Yan-Xia Mai; Ling-Zi Li; Jian Gao; Guang-Dong Shang; Heng Lian; Lin Han; Tian-Qi Zhang; Hong-Bo Tang; Hang Ren; Fu-Xiang Wang; Lian-Yu Wu; Xiao-Li Liu; Chang-Sheng Wang; Er-Wang Chen; Xue-Ning Zhang; Chang Liu; Jia-Wei Wang
Journal:  EMBO J       Date:  2019-03-06       Impact factor: 11.598

3.  CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.

Authors:  Nerina Gnesutta; Roderick W Kumimoto; Swadhin Swain; Matteo Chiara; Chamindika Siriwardana; David S Horner; Ben F Holt; Roberto Mantovani
Journal:  Plant Cell       Date:  2017-05-19       Impact factor: 11.277

4.  CYCLING DOF FACTOR 1 represses transcription through the TOPLESS co-repressor to control photoperiodic flowering in Arabidopsis.

Authors:  Greg S Goralogia; Tong-Kun Liu; Lin Zhao; Paul M Panipinto; Evan D Groover; Yashkarn S Bains; Takato Imaizumi
Journal:  Plant J       Date:  2017-09-05       Impact factor: 6.417

Review 5.  Circadian Clock and Photoperiodic Flowering in Arabidopsis: CONSTANS Is a Hub for Signal Integration.

Authors:  Jae Sung Shim; Akane Kubota; Takato Imaizumi
Journal:  Plant Physiol       Date:  2016-09-29       Impact factor: 8.340

Review 6.  Three-dimensional nuclear organization in Arabidopsis thaliana.

Authors:  Frédéric Pontvianne; Stefan Grob
Journal:  J Plant Res       Date:  2020-04-02       Impact factor: 2.629

7.  Structural Insight into DNA Recognition by CCT/NF-YB/YC Complexes in Plant Photoperiodic Flowering.

Authors:  Cuicui Shen; Haiyang Liu; Zeyuan Guan; Junjie Yan; Ting Zheng; Wenhao Yan; Changyin Wu; Qifa Zhang; Ping Yin; Yongzhong Xing
Journal:  Plant Cell       Date:  2020-08-25       Impact factor: 11.277

8.  Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.

Authors:  Xu Liu; Yuhua Yang; Yilong Hu; Limeng Zhou; Yuge Li; Xingliang Hou
Journal:  Plant Physiol       Date:  2018-03-29       Impact factor: 8.340

9.  The Chromatin-Remodeling Factor PICKLE Antagonizes Polycomb Repression of FT to Promote Flowering.

Authors:  Yanjun Jing; Qiang Guo; Rongcheng Lin
Journal:  Plant Physiol       Date:  2019-08-03       Impact factor: 8.340

10.  Photoperiodic Regulation of Florigen Function in Arabidopsis thaliana.

Authors:  Greg S Golembeski; Takato Imaizumi
Journal:  Arabidopsis Book       Date:  2015-06-24
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