Literature DB >> 24604825

Compensatory adaptations of structural dynamics in an intrinsically disordered protein complex.

Dennis Kurzbach1, Thomas C Schwarz, Gerald Platzer, Simone Höfler, Dariush Hinderberger, Robert Konrat.   

Abstract

Intrinsically disordered proteins (IDPs) play crucial roles in protein interaction networks and in this context frequently constitute important hubs and interfaces. Here we show by a combination of NMR and EPR spectroscopy that the binding of the cytokine osteopontin (OPN) to its natural ligand, heparin, is accompanied by thermodynamically compensating structural adaptations. The core segment of OPN expands upon binding. This "unfolding-upon-binding" is governed primarily through electrostatic interactions between heparin and charged patches along the protein backbone and compensates for entropic penalties due to heparin-OPN binding. It is shown how structural unfolding compensates for entropic losses through ligand binding in IDPs and elucidates the interplay between structure and thermodynamics of rapid substrate-binding and -release events in IDP interaction networks.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; compensatory entropy; intrinsically disordered proteins; osteopontin; protein complexes

Mesh:

Substances:

Year:  2014        PMID: 24604825     DOI: 10.1002/anie.201308389

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  18 in total

1.  Network representation of protein interactions: Theory of graph description and analysis.

Authors:  Dennis Kurzbach
Journal:  Protein Sci       Date:  2016-06-19       Impact factor: 6.725

2.  Dissecting the Energetics of Intrinsically Disordered Proteins via a Hybrid Experimental and Computational Approach.

Authors:  Junjie Zou; Carlos Simmerling; Daniel P Raleigh
Journal:  J Phys Chem B       Date:  2019-12-03       Impact factor: 2.991

3.  Dynamic footprint of sequestration in the molecular fluctuations of osteopontin.

Authors:  S Lenton; T Seydel; T Nylander; C Holt; M Härtlein; S Teixeira; G Zaccai
Journal:  J R Soc Interface       Date:  2015-09-06       Impact factor: 4.118

4.  Quarterly intrinsic disorder digest (April-May-June, 2014).

Authors:  Shelly DeForte; Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2017-03-01

Review 5.  Hyperpolarized water as universal sensitivity booster in biomolecular NMR.

Authors:  Christian Hilty; Dennis Kurzbach; Lucio Frydman
Journal:  Nat Protoc       Date:  2022-05-11       Impact factor: 17.021

Review 6.  Application and methodology of dissolution dynamic nuclear polarization in physical, chemical and biological contexts.

Authors:  Sami Jannin; Jean-Nicolas Dumez; Patrick Giraudeau; Dennis Kurzbach
Journal:  J Magn Reson       Date:  2019-06-04       Impact factor: 2.229

7.  FuzDB: database of fuzzy complexes, a tool to develop stochastic structure-function relationships for protein complexes and higher-order assemblies.

Authors:  Marton Miskei; Csaba Antal; Monika Fuxreiter
Journal:  Nucleic Acids Res       Date:  2016-10-28       Impact factor: 16.971

8.  Structural Insights into the Osteopontin-Aptamer Complex by Molecular Dynamics Simulations.

Authors:  Giovanni La Penna; Riccardo Chelli
Journal:  Front Chem       Date:  2018-01-30       Impact factor: 5.221

9.  Structural Constraint of Osteopontin Facilitates Efficient Binding to CD44.

Authors:  Gulimirerouzi Fnu; Palak Agrawal; Gopal C Kundu; Georg F Weber
Journal:  Biomolecules       Date:  2021-05-30

10.  Magnetic resonance access to transiently formed protein complexes.

Authors:  Tomáš Sára; Thomas C Schwarz; Dennis Kurzbach; Christoph H Wunderlich; Christoph Kreutz; Robert Konrat
Journal:  ChemistryOpen       Date:  2014-06-18       Impact factor: 2.911

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