| Literature DB >> 24604612 |
Raffaella Canali1, Lucia Natarelli, Guido Leoni, Elena Azzini, Raffaella Comitato, Oezgur Sancak, Luca Barella, Fabio Virgili.
Abstract
In order to study the effects of vitamin C supplementation on gene expression and compare its action between physiological and inflammatory conditions, a pilot study was set up utilizing microarray and qPCR technologies. Five healthy volunteers were supplemented with 1 g vitamin C (Redoxon(®)) per day for five consecutive days. Peripheral blood mononuclear cells (PBMNC) were isolated before and just after the last supplementation, and RNA was isolated for the Affymetrix gene 1.0 ST chip analysis. PBMNC were also, ex vivo, treated with LPS, and gene expression was quantified by means of a "Human NFkB Signaling" qPCR array. Only a very moderate effect on the baseline gene expression modulation was associated with vitamin C supplementation. However, in spite of the limited number of subjects analyzed, vitamin C supplementation resulted in a markedly different modulation of gene expression upon the inflammatory stimulus, specifically at the level of the MyD88-dependent pathway and of the anti-inflammatory cytokine IL-10 synthesis. This study suggests that vitamin C supplementation in healthy subjects, not selected according to a specific genetic profile, consuming an adequate amount of vitamin C, and having a satisfactory vitamin C plasma concentration at the baseline, does not result in a significant modification of gene expression profile. Under this satisfactory micronutrient status, supplementation of vitamin C is "buffered" within a homeostatic physiological equilibrium. Differently, following a second "hit" constituted of an inflammatory stimulus such as LPS, able to trigger a critical burst to the normal physiological state, the higher availability of ascorbic acid emerges, and results in a significant modulation of cell response.Entities:
Year: 2014 PMID: 24604612 PMCID: PMC4026433 DOI: 10.1007/s12263-014-0390-x
Source DB: PubMed Journal: Genes Nutr ISSN: 1555-8932 Impact factor: 5.523
Effect of vitamin C supplementation on gene expression level in PBMNC, assessed by means of Affymetrix and qPCR platforms
| Official gene symbol | Gene name | Affymetrix | Representative pathwaysc | QPCR | ||
|---|---|---|---|---|---|---|
| FCa |
| FCd |
| |||
| CANX | Calnexin | 1.13 | 0.0014 | Chromatin organization | ||
| CANX(1) | Calnexin1 | Chromatin organization | 0.18 ± 0.12 | N.S.f | ||
| CANX(2) | Calnexin2 | Chromatin organization | 0.53 ± 0.37 | 0.021 | ||
| ARF3 | ADP-ribosylation factor 3 | 0.98 | 0.0003 | Chromatin organization | ||
| SMNDC1 | Survival motor neuron domain containing 1 | 0.95 | 0.0054 | Chromatin organization | ||
| RPS24 | Ribosomal proteinS24 | 0.89 | 0.0015 | Chromatin organization | ||
| MYST2 | Histone acetyltransferase MYST2 | 0.87 | 0.0320 | Chromatin organization; ribonucleoprotein complex biosynthesis | ||
| NONO | Non-POU domain containing | 0.81 | 0.0040 | Ribonucleoprotein complex biosynthesis; RNA processing | ||
| ZNF259 | Zinc finger protein 259 | 0.81 | 0.0017 | Ribonucleoprotein complex biosynthesis; RNA processing | ||
| FNTA | Farnesyl-protein transferase alpha subunit | 0.79 | 0.0041 | Ribonucleoprotein complex biosynthesis; translation; RNA processing | ||
| Y_RNA | Small noncoding RNA components of the Ro ribonucleoprotein | 0.77 | 0.0101 | Ribonucleoprotein complex biosynthesis; translation; RNA processing | ||
| HRH4 | Histamine receptor H4 | 0.74 | 0.0191 | Ribonucleoprotein complex biosynthesis; translation; RNA processing | ||
| IK | IK cytokine | 0.73 | 0.0234 | Ribonucleoprotein complex synthesis | 0.15 ± 0.44 | N.S. |
| CTLA4 | Cytotoxic T-lymphocyte antigen 4 | 0.7 | 0.0234 | RNA processing | ||
| U1 | 0.68 | 0.0045 | RNA processing | |||
| 5S_rRNA | RRNA | 0.68 | 0.0325 | translation | ||
| EIF3D | Eukaryotic translation initiation factor 3, subunit D | 0.66 | 0.0018 | Translation | 0.008 ± 0.43 | N.S. |
| EIF4G2 | Eukaryotic translation initiation factor 4 gamma | 0.66 | 0.0085 | Translation | 0.24 ± 0.19 | N.S. |
| FAU | Finkel–Biskis–Reillymurine sarcoma virus (FBR-MuSV) | 0.66 | 0.0310 | 0.66 ± 0.16 | 0.008 | |
| SART3 | Squamous cell carcinoma antigen recognized by T cell 3 | 0.64 | 0.0140 | |||
| AC068228.1 | tRNA pseudogene | 0.63 | 0.0016 | |||
| RPL11 | Ribosomal protein L11 | 0.62 | 0.0045 | |||
| C11orf58 | Small acidic protein | 0.61 | 0.0234 | |||
| C1D | Nuclear receptor co-repressor | 0.6 | 0.0288 | |||
| HINT1 | Adenosine 5′-monophosphoramidase | 0.57 | 0.0212 | |||
| CBX3 | Heterochromatin protein 1 homolog gamma | 0.54 | 0.0129 | |||
| NPM1 | Nucleophosmin 1 | 0.53 | 0.0090 | 0.25 ± 0.75 | N.S. | |
| RPS7 | 40S Ribosomal protein S7 | 0.52 | 0.0186 | |||
| HIST1H2BB | Histone H2B type 1-B | −0.57 | 0.0254 | |||
| SNORA42 | Small nucleolar RNA | −0.65 | 0.0069 | |||
| RNU5E | RNA, U5E small nuclear | −0.86 | 0.0116 | |||
| AC025562.1 | ScRNA pseudogene | −0.55 | 0.0210 | |||
| AL139097.1 | RRNA pseudogene | −0.52 | 0.0086 | |||
| AL138832.1 | RRNA pseudogene | −0.61 | 0.0023 | |||
| AP003461.5 | Mt tRNA pseudogene | −0.51 | 0.0036 | |||
| AC105285.2 | ScRNA pseudogene | −0.56 | 0.0297 | |||
| AL358813.3 | tRNA pseudogene | −0.84 | 0.0064 | |||
| AL953889.1 | ScRNA pseudogene | 0.52 | 0.0356 | |||
| RP11613C6.4 | Processed pseudogene | 0.75 | 0.0390 | |||
| AL353774.1 | tRNA pseudogene | 0.55 | 0.0408 | |||
aData are expressed by mean of log2 fold change (FC). FC threshold cutoff ≤ ≥ 0.5
bStatistical significance of differences in microarray expression between supplemented PBMNC and baseline PBMNC, estimated by ANOVA test (p < 0.05)
cThe overrepresented biological pathway was identified by DAVID functional annotation clustering tool
dData are expressed as mean ± SD of log2 of fold change (FC)
eStatistical significance of differences in gene expression between supplemented PBMNC and baseline PBMNC, estimated by paired Student’s t test (p < 0.05; threshold cutoff ≤ ≥ 0.5)
fN.S. no significant difference
Fig. 1Plasma concentration of total ascorbic acid (AA) before and after the supplementation. *Significantly different p < 0.05 compared to baseline
Effect of LPS on gene expression level in PBMNC before and after vitamin C supplementation, analyzed using Human NFκB Signaling 96 STELLARRAY ™ qPCR array
| Official gene symbol | Gene name | Baseline PBMNC |
| Supplemented PBMNC |
|
|---|---|---|---|---|---|
| FC | FC | ||||
| BCL3 | B-cell leukemia/lymphoma 3 | 2.08 ± 0.78 | 1 × 10−3 | 1.88 ± 0.51 | 5 × 10−4 |
| EGR1 | Early growth response 1 | −3.01 ± 0.61 | 8 × 10−4 | −3.99 ± 0.88 | 9 × 10−6 |
| EIF2AK2 | Eukaryotic translation initiation factor 2-alpha kinase 2 | 2.64 ± 0.89 | 3 × 10−3 | 2.84 ± 0.99 | 3 × 10−4 |
| FOS | Proto-oncogene c-Fos | −4.52 ± 1.29 | 6 × 10−4 | −5.88 ± 0.80 | 1.5 × 10−7 |
| IRAK2 | Interleukin-1 receptor-associated kinase 2 | 2.74 ± 1.04 | 3 × 10−3 | 2.77 ± 0.61 | 7 × 10−4 |
| MAP2K6 | Mitogen-activated protein kinase kinase 6 | −3.33 ± 1.16 | 1 × 10−3 | −3.36 ± 1.18 | 1 × 10−4 |
| MAP3K3 | Mitogen-activated protein kinase kinase kinase 3 | −1.35 ± 0.76 | 1 × 10−2 | −1.64 ± 0.57 | 5 × 10−4 |
| MAPK11 | Mitogen-activated protein kinase 11 | 2.25 ± 0.58 | 6 × 10−4 | 2.40 ± 0.45 | 2 × 10−5 |
| MAPK3 | Mitogen-activated protein kinase 3 | −1.14 ± 0.46 | 3 × 10−2 | −1.81 ± 0.41 | 6 × 10−3 |
| NFKB1 | Nuclear factor NF-kappa-B p105 subunit | 2.64 ± 0.43 | 1 × 10−4 | 2.36 ± 0.17 | 3 × 10−6 |
| NFKB1A | NF-kappa-B inhibitor alpha | 1.82 ± 0.62 | 6 × 10−3 | 1.07 ± 0.88 | 3 × 10−2 |
| NFKB2 | Nuclear factor NF-kappa-B p100 subunit | 2.33 ± 0.18 | 1 × 10−5 | 2.02 ± 0.52 | 9 × 10−4 |
| STAT1 | Signal transducer and activator of transcription 1-alpha/beta | 3.69 ± 0.86 | 4 × 10−5 | 3.82 ± 0.18 | 4 × 10−8 |
| TIFA | TRAF-interacting protein with forkhead-associated domain | 1.97 ± 0.60 | 1 × 10−3 | 1.84 ± 0.53 | 1 × 10−5 |
| TNFAIP3 | Tumor necrosis factor, alpha-induced protein 3 | 1.43 ± 0.55 | 4 × 10−3 | 1.30 ± 0.50 | 1 × 10−3 |
| TNIP2 | TNFAIP3-interacting protein 2 | 1.05 ± 0.52 | 1 × 10−2 | 1.10 ± 0.35 | 8 × 10−3 |
| TRAF3IP2 | Adapter protein CIKS | 2.04 ± 1.06 | 1 × 10−3 | 2.25 ± 0.57 | 2 × 10−3 |
| IL1A | Interleukin-1 alpha | 6.10 ± 2.83 | 8 × 10−3 | 5.84 ± 1.68 | 1 × 10−3 |
| IL1B | Interleukin-1 beta | 3.47 ± 1.61 | 8 × 10−3 | 3.16 ± 1.07 | 3 × 10−3 |
| IL6 | Interleukin-6 | 9.24 ± 2.36 | 9 × 10−4 | 10.02 ± 1.48 | 1 × 10−4 |
| IL8 | Interleukin-8 | 2.66 ± 1.70 | 2 × 10−2 | 2.43 ± 1.33 | 1 × 10−2 |
| IL10 | Interleukin-10 | 3.30 ± 1.42 | 3 × 10−3 | 3.02 ± 0.96 | 1 × 10−3 |
| CFLAR | CASP8 and FADD-like apoptosis regulator precursor | 1.05 ± 0.4 | 6 × 10−3 | 0.92 ± 0.34 | N.Sb |
| MAP2K3 | Mitogen-activated protein kinase kinase 3 | 1.83 ± 0.81 | 2 × 10−3 | 0.97 ± 1.41 | N.S. |
| MAP3K7IP1 | Mitogen-activated protein kinase kinase kinase 7-interacting protein 1 | 0.017 ± 0.60 | N.S. | −1.04 ± 0.45 | 1 × 10−2 |
| MAP3K8 | Mitogen-activated protein kinase kinase kinase 8 | 2.89 ± 0.88 | 2 × 10−3 | 2.1 ± 2.27 | N.S. |
| MAPK14 | Mitogen-activated protein kinase 14 | −0.82 ± 0.94 | N.S. | −1.19 ± 0.71 | 3 × 10−2 |
| MYD88 | Myeloid differentiation primary response protein MyD88 | 1.12 ± 0.40 | 6 × 10−3 | 0.5 ± 0.46 | N.S. |
| PPP1R13L | RelA-associated inhibitor | −0.49 ± 0.87 | N.S. | −1.18 ± 0.66 | 2 × 10−2 |
| RELB | Transcription factor RelB | 2.68 ± 1.22 | 5 × 10−3 | 1.24 ± 0.53 | 7 × 10−4 |
| TICAM1 | Toll-like receptor adaptor molecule 1 | 1.37 ± 0.59 | 2 × 10−2 | 0.94 ± 0.61 | N.S. |
| TIRAP | Toll-interleukin 1 receptor (TIR) domain containing adaptor protein | −0.47 ± 0.21 | N.S. | −1.00 ± 0.41 | 7 × 10−3 |
| TNFRSF11A | Tumor necrosis factor receptor superfamily member 11A precursor | −1.32 ± 1.13 | N.S. | −3.24 ± 0.82 | 3 × 10−4 |
| TRADD | Tumor necrosis factor receptor type 1-associated DEATH domain protein | 1.51 ± 0.67 | 1 × 10−2 | 0.89 ± 0.32 | N.S. |
| TNF-α | Tumor necrosis factor-alpha | 2.75 ± 0.83 | 2 × 10−3 | 1.26 ± 1.55 | N.S. |
| ZAP70 | Tyrosine-protein kinase ZAP-70 | −0.23 ± 0.26 | N.S. | −1.11 ± 0.45 | 8 × 10−3 |
Data are expressed by mean ± SD of log2 fold change (FC) (FC threshold cutoff ≤≥1)
aStatistical significance of differences in gene expression between LPS treated and control both in baseline and supplemented PBMNC, estimated by paired Student’s t test (p < 0.05)
bN.S. no significant difference
Fig. 2Effect of LPS on IL1A, IL1B, and IL6 release in PBMNC isolated before and after vitamin C supplementation. *Significantly different, p < 0.05, compared to control in baseline PBMNC; **Significantly different, p < 0.05, compared to control in supplemented PBMNC
Fig. 3Effect of LPS on IL8, TNFα, and IL10 release in PBMNC isolated before and after vitamin C supplementation. *Significantly different, p < 0.05, compared to control in baseline PBMNC; **Significantly different, p < 0.05, compared to control in supplemented PBMNC
Fig. 4Description of LPS-dependent gene expression modulation within MyD88-dependent pathway in PBMNC. a Before the supplementation, b after the supplementation. Rectangles represent FC of gene expression, and circles represent the cytokines release in the medium at the end of LPS incubation
| Canx-(1) | FW: 5′TCCGCCTCTCTCTTTACTGC3′ | RV: 5′CATGATCTCTAGCCTCCCGG3′ |
| Canx-(2) | FW: 5′CGGCACGTGACGGTCGG3′ | RV: 5′CCTTCCATGATCTTGCCCCGC3′ |
| FAU | FW: 5′CTCCTGTTTGGCCACCTTAG3′ | RV: 5′CTACCCTGGAAGTAGCAGGC3′ |
| EIF3D | FW: 5′TCGCTGAGAGTCCAGCTTCT 3′ | RV: 5′AACGGGGAAGTGTCCTTCAT3′ |
| IK | FW: 5′ACGTGACTTAGAAGGTGGTGC3′ | RV: 5′TGATCCTCACTCCTTCCACC3′ |
| EIF4G2 | FW: 5′CGGCTTGACAACGAAGAATC 3′ | RV: 5′GGTGGCAGCTGCTGAGTT3′ |
| NPM1 | FW: 5′GGCGCTTTTTCTTCAGCTT3′ | RV: 5′GGTCTGCCCCTGGAGGT3′ |
| IL1A | FW: 5′CCGTGAGTTTCCCAGAAGAA3′ | RV: 5′ACTGCCCAAGATGAAGACCA 3′ |
| IL1B | FW 5′AAGCCCTTGCTGTAGTGGTG3′ | RV: 5′GAAGCTGATGGCCCTAAACA3′ |
| IL6 | FW: 5′GTCAGGGGTGGTTATTGCAT3′ | RV: 5′AGTGAGGAACAAGCCAGAGC 3′ |
| IL8 | FW: 5′AAATTTGGGGTGGAAGGTT3′ | RV: 5′TCCTGATTTCTGCAGCTCTGT 3′ |
| IL10 | FW: 5′CTCATGGCTTTGTAGATGCCT3′ | RV: 5′GCTGTCATCGATTTCTTCCC3′ |
| TNFα | FW: 5′AGATGATCTGACTGCCTGGG3′ | RV: 5′CTGCTGCACTTTGGAGTGAT3′ |
| HPRT | FW: 5′TTAATGTAATCCAGCAGGCAGC3′ | RV:5′CTCATGGACCTGATTATGGACAGG3′ |
| βACTIN | FW: 5′AGAGCTAGCTGCCTGAC 3′ | RV:5′GGATGCCACAGGACTCCA3′ |