| Literature DB >> 24603720 |
Lei Gao1, Zhao Li1, Suhua Chang2, Jing Wang2.
Abstract
BACKGROUND: The involvement of cytokines in schizophrenia (SZ) has been proposed in recent years and various studies have accumulated convergent lines of evidence. Among which, the role of interleukin-10 (IL-10) in SZ has been explored in a number of studies by investigating association of single nucleotide polymorphisms (SNPs) and susceptibility of SZ. However, the results are inconsistent since its power is limited by the individual sample size. To evaluate the overall effect between them, we conducted a meta-analysis by combining all available studies.Entities:
Mesh:
Substances:
Year: 2014 PMID: 24603720 PMCID: PMC3946087 DOI: 10.1371/journal.pone.0090407
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristics of the included studies.
| Study | Cases | Controls | |||||||||
| Diagnostic | Country | Male | Age | Male | Age | Ref | |||||
| criteria | /Area | Ethnicity | Investigated SNPs | N | (%) | (year) | N | (%) | (year) | ||
| Bocchio(2002) | DSM-IV | Italy | Caucasian | rs1800896, rs1800871, rs1800872 | 106 | NA | NA | 143 | NA | NA |
|
| Yu(2004) | DSM-IIIR | China | Asian | rs1800896, rs1800871, rs1800872 | 341 | 54 | 42±16 | 334 | 52 | 42±16 |
|
| Shirts(2006) | DSM-IV | USA | Caucasian | rs1800872 | 471 | 65 | 38±10 | 453 | 52 | NA |
|
| Peng(2008) | DSM-IV | Taiwan | Asian | rs1800896, rs1800871, rs1800872 | 659 | 70 | 36±11 | 411 | 43 | 45±14 |
|
| Ozbey(2009) | DSM-IV | Turkey | Asian | rs1800896, rs1800871, rs1800872 | 171 | 45 | 38±11 | 168 | 45 | 36±15 |
|
| Almoguera(2011) | DSM-IV | Spain | Caucasian | rs1800896, rs1800871, rs1800872 | 241 | 63 | NA | 435 | 46 | NA |
|
| PGC(CATIE)(2011) | DSM-IV | USA | Caucasian | rs1800872 | 395 | NA | NA | 391 | NA | NA |
|
| Jun(2003) | DSM-IV | Korea | Asian | rs1800896 | 233 | 41 | 32 | 181 | 46 | 32 |
|
| Jun(2002) | DSM-IV | Korea | Asian | rs1800871 | 141 | NA | NA | 146 | NA | NA |
|
| Paul-Samojedny(2010) | DSM-IV | Poland | Caucasian | rs1800896 | 96 | 38 | 45±12 | 120 | 33 | 39±10 |
|
| Lung(2011) | DSM-IV | Taiwan | Asian | rs1800896, rs1800871, rs1800872 | 233a | 78 | NA | 433 | 44 | 45±14 |
|
PGC(CATIE): data from samples in Clinical Antipsychotic Trials of Intervention Effectiveness of Psychiatric Genomics Consortium; SNPs: single nucleotide polymorphisms; DSM: diagnosis and statistical manual of mental health disorders; NA:not available; aCases after excluding overlapping samples with study [23].
Figure 1Flow chart of study selection.
Genotype frequencies of investigated SNPs/haplotypes.
| SNP/Haplotype | No. of | Genotype frequencies of SNPs/haplotypes | |||||
| Study | case/control | Genotype | Case | Control | HWE | Ref | |
| rs1800871 | Jun(2002) | 141/146 | CC/CT/TT | 0.092/0.44/0.468 | 0.089/0.425/0.486 | 0.919 |
|
| Yu(2004) | 341/334 | 0.170/0.372/0.457 | 0.183/0.392/0.425 | 0.002 |
| ||
| Peng(2008) | 659/411 | 0.111/0.358/0.531 | 0.100/0.362/0.538 | 0.031 |
| ||
| Ozbey(2009) | 171/173 | 0.170/0.374/0.456 | 0.183/0.391/0.426 | 0.027 |
| ||
| rs1800872 | Bocchio(2002) | 106/143 | AA/AC/CC | 0.104/0.349/0.547 | 0.077/0.455/0.469 | 0.378 |
|
| Yu(2004) | 341/334 | 0.302/0.513/0.185 | 0.213/0.577/0.210 | 0.004 |
| ||
| Shirts(2006) | 471/453 | 0.087/0.321/0.592 | 0.046/0.416/0.538 | 0.057 |
| ||
| Peng(2008) | 659/411 | 0.51/0.417/0.073 | 0.496/0.404/0.100 | 0.400 |
| ||
| Ozbey(2009) | 171/168 | 0.304/0.515/0.181 | 0.214/0.589/0.196 | 0.064 |
| ||
| Almoguera(2011) | 241/244 | 0.091/0.365/0.544 | 0.066/0.367/0.567 | 0.719 |
| ||
| PGC(CATIE)(2011) | 395/391 | 0.068/0.359/0.572 | 0.046/0.332/0.621 | 0.908 |
| ||
| rs1800896 | Bocchio(2002) | 106/143 | GG/GA/AA | 0.217/0.368/0.415 | 0.084/0.406/0.510 | 0.92 |
|
| Jun(2003) | 233/236 | 0.000/0.180/0.820 | 0.017/0.133/0.851 | 0.086 |
| ||
| Yu(2004) | 341/334 | 0.000/0.141/0.859 | 0.003/0.141/0.856 | 0.521 |
| ||
| Peng(2008) | 659/411 | 0.005/0.060/0.935 | 0.002/0.112/0.886 | 0.719 |
| ||
| Ozbey(2009) | 171/168 | 0.000/0.140/0.860 | 0.006/0.143/0.851 | 0.995 |
| ||
| Paul-Samojedny(2010) | 96/120 | 0.302/0.635/0.063 | 0.133/0.742/0.125 | <0.001 |
| ||
| Almoguera(2011) | 241/278 | 0.141/0.415/0.444 | 0.163/0.506/0.331 | 0.395 |
| ||
| Yu(2004) | 341/334 | A-C-A | 0.063 | 0.048 | NA |
| |
| Peng(2008) | 659/411 | 0.032 | 0.009 |
| |||
| Ozbey(2009) | 171/168 | 0.015 | 0.012 |
| |||
| Lung(2011) | 275/433 | 0.013 | 0.009 |
| |||
| Bocchio(2002) | 106/143 | A-C-C | 0.321 | 0.413 | NA |
| |
| Yu(2004) | 341/334 | 0.246 | 0.259 |
| |||
| Peng(2008) | 659/411 | 0.229 | 0.232 |
| |||
| Ozbey(2009) | 171/168 | 0.061 | 0.065 |
| |||
| Almoguera(2011) | 269/381 | 0.335 | 0.341 |
| |||
| Bocchio(2002) | 106/143 | A-T-A | 0.278 | 0.304 | NA |
| |
| Yu(2004) | 341/334 | 0.475 | 0.454 |
| |||
| rs1800896- | Peng(2008) | 659/411 | 0.688 | 0.685 |
| ||
| rs1800871-rs1800872 | Ozbey(2009) | 171/168 | 0.120 | 0.113 |
| ||
| Almoguera(2011) | 269/381 | 0.247 | 0.248 |
| |||
| Yu(2004) | 341/334 | A-T-C | 0.145 | 0.165 | NA |
| |
| Peng(2008) | 659/411 | 0.015 | 0.016 |
| |||
| Ozbey(2009) | 171/168 | 0.035 | 0.042 |
| |||
| Bocchio(2002) | 106/143 | G-C-C | 0.401 | 0.283 | NA |
| |
| Yu(2004) | 341/334 | 0.048 | 0.060 |
| |||
| Peng(2008) | 659/411 | 0.034 | 0.054 |
| |||
| Ozbey(2009) | 171/168 | 0.012 | 0.015 |
| |||
| Almoguera(2011) | 269/381 | 0.314 | 0.411 |
| |||
| Lung(2011) | 275/433 | 0.027 | 0.054 |
| |||
| Yu(2004) | 341/334 | G-T-A | 0.021 | 0.000 | NA |
| |
| Peng(2008) | 659/411 | 0.002 | 0.005 |
| |||
| Ozbey(2009) | 171/168 | 0.006 | 0.000 |
| |||
HWE: Hardy-Weinberg equilibrium; NA: not applicable.
Results of meta-analysis.
| SNP/Haplotype | Genetic model | Meta-analysis | Heterogeneity | Bias | ||
| Pooled OR(95% CI) | P-value | I2 | P-value | P-value | ||
| rs1800096 | allele G vs. allele A | 1.022(0.758 – 1.377) | 0.888 | 74.5% | 0.001 | 0.566 |
| 1.24(0.698 – 2.203) | 0.462 | 89.2% | 0.000 | 0.049 | ||
| 0.868(0.667 – 1.128) | 0.289b | 15.0% | 0.317 | 0.863 | ||
| GG+GA vs. AA | 0.953(0.688 – 1.32) | 0.772 | 64.8% | 0.009 | 0.112 | |
| 1.147(0.537 – 2.449) | 0.723 | 82.7% | 0.003 | 0.322 | ||
| 0.886(0.625 – 1.254) | 0.494b | 45.4% | 0.139 | 0.964 | ||
| GG vs. GA+AA | 1.351(0.621 – 2.942) | 0.448 | 66.1% | 0.007 | 0.747 | |
| 1.858(0.746 – 4.63) | 0.183 | 84.7% | 0.001 | 0.079 | ||
| 0.503(0.119 – 2.127) | 0.350b | 0.0% | 0.447 | 0.187 | ||
| rs1800871 | allele C vs. allele T | 0.98(0.867 – 1.109) | 0.752 | 0.0% | 0.735 | 0.828 |
| CC+CT vs. TT | 0.967(0.822 – 1.139) | 0.688 | 0.0% | 0.797 | 0.837 | |
| CC vs. CT+TT | 0.997(0.785 – 1.267) | 0.980 | 0.0% | 0.888 | 0.917 | |
| rs1800872 | allele A vs. allele C |
|
| 0.0% | 0.471 | 0.744 |
| AA+AC vs. CC | 1.016(0.900 – 1.147) | 0.796 | 21.6% | 0.265 | 0.997 | |
| AA vs. AC+CC |
|
| 19.2% | 0.284 | 0.12 | |
| rs1800896- rs1800871-rs1800872 | G-C-C vs. non G-C-C | 0.784(0.533 – 1.153) | 0.216 | 77.1% | 0.001 | 0.927 |
| 1.042(0.412 – 2.636) | 0.930 | 94.3% | 0.000 | NA | ||
|
|
| 0.0% | 0.759 | 0.561 | ||
| A-C-A vs. non A-C-A |
|
| 44.4% | 0.145 | 0.778 | |
| A-T-C vs. non A-T-C | 0.871(0.674–1.126) | 0.292b | 0.0% | 0.957 | 0.725 | |
| G-T-A vs. non G-T-A | 3.037(0.132–70.084) | 0.488b | 79.0% | 0.008 | 0.263 | |
| A-C-C vs. non A-C-C | 0.927(0.822 – 1.046) | 0.220 | 0.0% | 0.507 | 0.36 | |
| A-T-A vs. non A-T-A | 1.023(0.912–1.147) | 0.699 | 0.0% | 0.914 | 0.528 | |
studies with Caucasian samples were included; bstudies with Asian samples were included; NA: not available; OR: Odds ratio; CI: confidence interval; significant results of pooled ORs are presented in bold.
Figure 2Forest plots of pooled odds ratios in meta-analysis.
A. Allele A vs. allele C (rs1800872). B. AA vs. AC+CC (rs1800872). C. Haplotype A-C-A (Asian samples). D. Haplotype G-C-C (Asian samples).