Literature DB >> 24600011

Highly specific salt bridges govern bacteriophage P22 icosahedral capsid assembly: identification of the site in coat protein responsible for interaction with scaffolding protein.

Juliana R Cortines1, Tina Motwani, Aashay A Vyas, Carolyn M Teschke.   

Abstract

UNLABELLED: Icosahedral virus assembly requires a series of concerted and highly specific protein-protein interactions to produce a proper capsid. In bacteriophage P22, only coat protein (gp5) and scaffolding protein (gp8) are needed to assemble a procapsid-like particle, both in vivo and in vitro. In scaffolding protein's coat binding domain, residue R293 is required for procapsid assembly, while residue K296 is important but not essential. Here, we investigate the interaction of scaffolding protein with acidic residues in the N-arm of coat protein, since this interaction has been shown to be electrostatic. Through site-directed mutagenesis of genes 5 and 8, we show that changing coat protein N-arm residue 14 from aspartic acid to alanine causes a lethal phenotype. Coat protein residue D14 is shown by cross-linking to interact with scaffolding protein residue R293 and, thus, is intimately involved in proper procapsid assembly. To a lesser extent, coat protein N-arm residue E18 is also implicated in the interaction with scaffolding protein and is involved in capsid size determination, since a cysteine mutation at this site generated petite capsids. The final acidic residue in the N-arm that was tested, E15, is shown to only weakly interact with scaffolding protein's coat binding domain. This work supports growing evidence that surface charge density may be the driving force of virus capsid protein interactions. IMPORTANCE: Bacteriophage P22 infects Salmonella enterica serovar Typhimurium and is a model for icosahedral viral capsid assembly. In this system, coat protein interacts with an internal scaffolding protein, triggering the assembly of an intermediate called a procapsid. Previously, we determined that there is a single amino acid in scaffolding protein required for P22 procapsid assembly, although others modulate affinity. Here, we identify partners in coat protein. We show experimentally that relatively weak interactions between coat and scaffolding proteins are capable of driving correctly shaped and sized procapsids and that the lack of these proper protein-protein interfaces leads to aberrant structures. The present work represents an important contribution supporting the hypothesis that virus capsid assembly is governed by seemingly simple interactions. The highly specific nature of the subunit interfaces suggests that these could be good targets for antivirals.

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Year:  2014        PMID: 24600011      PMCID: PMC4019102          DOI: 10.1128/JVI.00036-14

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  50 in total

1.  The 25 amino acid residues at the carboxy terminus of the herpes simplex virus type 1 UL26.5 protein are required for the formation of the capsid shell around the scaffold.

Authors:  J Kennard; F J Rixon; I M McDougall; J D Tatman; V G Preston
Journal:  J Gen Virol       Date:  1995-07       Impact factor: 3.891

2.  The folded conformation of phage P22 coat protein is affected by amino acid substitutions that lead to a cold-sensitive phenotype.

Authors:  D G Fong; S M Doyle; C M Teschke
Journal:  Biochemistry       Date:  1997-04-01       Impact factor: 3.162

3.  Functional domains of bacteriophage P22 scaffolding protein.

Authors:  M H Parker; S Casjens; P E Prevelige
Journal:  J Mol Biol       Date:  1998-08-07       Impact factor: 5.469

4.  Structure of a viral procapsid with molecular scaffolding.

Authors:  T Dokland; R McKenna; L L Ilag; B R Bowman; N L Incardona; B A Fane; M G Rossmann
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

5.  Bacteriophage P22 scaffolding protein forms oligomers in solution.

Authors:  M H Parker; W F Stafford; P E Prevelige
Journal:  J Mol Biol       Date:  1997-05-09       Impact factor: 5.469

6.  The UL36 tegument protein of herpes simplex virus 1 has a composite binding site at the capsid vertices.

Authors:  Giovanni Cardone; William W Newcomb; Naiqian Cheng; Paul T Wingfield; Benes L Trus; Jay C Brown; Alasdair C Steven
Journal:  J Virol       Date:  2012-02-15       Impact factor: 5.103

7.  Identification of a minimal hydrophobic domain in the herpes simplex virus type 1 scaffolding protein which is required for interaction with the major capsid protein.

Authors:  Z Hong; M Beaudet-Miller; J Durkin; R Zhang; A D Kwong
Journal:  J Virol       Date:  1996-01       Impact factor: 5.103

8.  Three-dimensional structure of scaffolding-containing phage p22 procapsids by electron cryo-microscopy.

Authors:  P A Thuman-Commike; B Greene; J Jakana; B V Prasad; J King; P E Prevelige; W Chiu
Journal:  J Mol Biol       Date:  1996-07-05       Impact factor: 5.469

9.  Interactions between coat and scaffolding proteins of phage P22 are altered in vitro by amino acid substitutions in coat protein that cause a cold-sensitive phenotype.

Authors:  C M Teschke; D G Fong
Journal:  Biochemistry       Date:  1996-11-26       Impact factor: 3.162

10.  Effects of an early conformational switch defect during ϕX174 morphogenesis are belatedly manifested late in the assembly pathway.

Authors:  Emile B Gordon; Bentley A Fane
Journal:  J Virol       Date:  2012-12-19       Impact factor: 5.103

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  13 in total

1.  The Robust Assembly of Small Symmetric Nanoshells.

Authors:  Jef Wagner; Roya Zandi
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

2.  ϕX174 Procapsid Assembly: Effects of an Inhibitory External Scaffolding Protein and Resistant Coat Proteins In Vitro.

Authors:  James E Cherwa; Joshua Tyson; Gregory J Bedwell; Dewey Brooke; Ashton G Edwards; Terje Dokland; Peter E Prevelige; Bentley A Fane
Journal:  J Virol       Date:  2016-12-16       Impact factor: 5.103

3.  NMR Mapping of Disordered Segments from a Viral Scaffolding Protein Enclosed in a 23 MDa Procapsid.

Authors:  Richard D Whitehead; Carolyn M Teschke; Andrei T Alexandrescu
Journal:  Biophys J       Date:  2019-09-06       Impact factor: 4.033

4.  Chemically Induced Morphogenesis of P22 Virus-like Particles by the Surfactant Sodium Dodecyl Sulfate.

Authors:  Ekaterina Selivanovitch; Ranjit Koliyatt; Trevor Douglas
Journal:  Biomacromolecules       Date:  2018-12-10       Impact factor: 6.988

Review 5.  Nature's favorite building block: Deciphering folding and capsid assembly of proteins with the HK97-fold.

Authors:  Margaret M Suhanovsky; Carolyn M Teschke
Journal:  Virology       Date:  2015-04-08       Impact factor: 3.616

6.  Measurement of the accurate mass of a 50 MDa infectious virus.

Authors:  David Z Keifer; Tina Motwani; Carolyn M Teschke; Martin F Jarrold
Journal:  Rapid Commun Mass Spectrom       Date:  2016-09-15       Impact factor: 2.419

7.  A Molecular Staple: D-Loops in the I Domain of Bacteriophage P22 Coat Protein Make Important Intercapsomer Contacts Required for Procapsid Assembly.

Authors:  Nadia G D'Lima; Carolyn M Teschke
Journal:  J Virol       Date:  2015-08-12       Impact factor: 5.103

8.  Contextual Role of a Salt Bridge in the Phage P22 Coat Protein I-Domain.

Authors:  Christina Harprecht; Oghenefejiro Okifo; Kevin J Robbins; Tina Motwani; Andrei T Alexandrescu; Carolyn M Teschke
Journal:  J Biol Chem       Date:  2016-03-22       Impact factor: 5.157

9.  Molecular exclusion limits for diffusion across a porous capsid.

Authors:  Ekaterina Selivanovitch; Benjamin LaFrance; Trevor Douglas
Journal:  Nat Commun       Date:  2021-05-18       Impact factor: 14.919

10.  Portal protein functions akin to a DNA-sensor that couples genome-packaging to icosahedral capsid maturation.

Authors:  Ravi K Lokareddy; Rajeshwer S Sankhala; Ankoor Roy; Pavel V Afonine; Tina Motwani; Carolyn M Teschke; Kristin N Parent; Gino Cingolani
Journal:  Nat Commun       Date:  2017-01-30       Impact factor: 14.919

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