| Literature DB >> 24599062 |
Philippe Barboza1, Laetitia Vaillant1, Yann Le Strat2, David M Hartley3, Noele P Nelson4, Abla Mawudeku5, Lawrence C Madoff6, Jens P Linge7, Nigel Collier8, John S Brownstein9, Pascal Astagneau10.
Abstract
BACKGROUND: Internet-based biosurveillance systems have been developed to detect health threats using information available on the Internet, but system performance has not been assessed relative to end-user needs and perspectives. METHOD ANDEntities:
Mesh:
Year: 2014 PMID: 24599062 PMCID: PMC3944226 DOI: 10.1371/journal.pone.0090536
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Biosurveillance systems included in the study.
| System name | System owner/developer | Country | Starting date | Type of Moderation | n languages | references |
| Argus | Georgetown University Medical Center | USA | 2004 | Human moderation | 50 |
|
| BioCaster | National Institute of Informatics | Japan | 2006 | Fully automated | 7 |
|
| GPHIN | Public Health Agency of Canada | Canada | 1997 | Human moderation | 9 |
|
| HealthMap | Harvard University | USA | 2006 | Automated | 7 |
|
| MedISys | Joint Research Centre | EU | 2004 | Fully automated | 60 |
|
| ProMED | International Society of Infectious Diseases | USA | 1994 | Human moderation | 7 |
|
*Partially moderated.
Definition of indicators and rates.
| Indicators | Abrev. | Definition |
| Crude Detected Event | CDET | First signal relating to a health event included in the gold-standard |
| Intrinsically Detected Event | IDET | First signal detected primarily by the system (excluding signal originating from another system included in the study) |
| Not-Detected Event | NDET1 | Event not detected by the system |
| NDET2 | Event not detected by the system or not primarily detected by the system | |
| Crude True Positive event | CTP | First signal related to an event included in the gold-standard and detected by a system before the reporting of the event in the BHI |
| Intrinsic True Positive event | ITP | First signal related to an event included in the gold-standard, detected by a system before its reporting in the BHI and primarily detected by the system |
| False Negative | FN1 | Event not detected by the system before its reporting in the BHI |
| FN2 | Event not detected by the system before its reporting in the BHI or not detected primarily by the system | |
|
|
|
|
| Crude Detection Rate | C-DR | Ability of a system to detect confirmed infectious disease outbreaks. C-DR = (C-DET)/(CDET+NDET1) |
| Intrinsic Detection Rate | I-DR | Ability of a system to detect confirmed infectious disease outbreaks independently from other systems. I-DR = (IDET+NDET2) |
| Crude Sensitivity Rate | C-Se | Ability of a system to detect confirmed infectious disease outbreaks prior to the publication in the BHI. C-Se = (CTP)/(CTP+FN1). |
| Intrinsic Sensitivity Rate | I-Se | Ability of a system to detect confirmed infectious disease outbreaks independently from other systems and before their publication in the BHI. I-Se = (ITP)/(ITP+FN2)). |
Nature and geographic distribution of events reported in InVS weekly international bulletin (BHI), 2010.
| Diseases | America | Sub-Saharan Africa | Asia | Europe | North-Africa Middle-East | Total | |||||||
| n |
| n | % | n | % | n | % | n | % | n | % | ||
| West Nile | - |
| - |
| - |
| 13 |
| 5 |
| 18 |
| |
| Dengue | 4 |
| 4 |
| 2 |
| 1 |
| 1 |
| 12 |
| |
| Cholera | 5 |
| 1 |
| 4 |
| - |
| - |
| 10 |
| |
| Rift Valley Fever | - |
| 6 |
| - |
| - |
| 2 |
| 8 |
| |
| Yellow fever | - |
| 6 |
| - |
| - |
| - |
| 6 |
| |
| Poliomyelitis | - |
| 1 |
| 4 |
| 1 |
| - |
| 6 |
| |
| Chikungunya | - |
| 2 |
| 1 |
| - |
| - |
| 3 |
| |
| Plague | 2 |
| 1 |
| - |
| - |
| - |
| 3 |
| |
| Malaria | - |
| - |
| - |
| 2 |
| 1 |
| 3 |
| |
| Saint Louis enc. | 2 |
| - |
| - |
| - |
| - |
| 2 |
| |
| Mayaro | 2 |
| - |
| - |
| - |
| - |
| 2 |
| |
| Measles | 2 |
| - |
| - |
| - |
| - |
| 2 |
| |
| Venezuelan Eq. Enc. | 2 |
| - |
| - |
| - |
| - |
| 2 |
| |
| Eastern Eq. Enc. | 1 |
| - |
| - |
| - |
| - |
| 1 |
| |
| Oropuche | 1 |
| - |
| - |
| - |
| - |
| 1 |
| |
| Crimean–Congo HF | - |
| - |
| 1 |
| - |
| - |
| 1 |
| |
| Nipah | - |
| - |
| 1 |
| - |
| - |
| 1 |
| |
| Alkhurma | - |
| - |
| - |
| - |
| 1 |
| 1 |
| |
| Influenza | 1 |
| - |
| - |
| - |
| - |
| 1 |
| |
| Typhoid | - |
| - |
| 1 |
| - |
| - |
| 1 |
| |
| Diphtheria | 1 |
| - |
| - |
| - |
| - |
| 1 |
| |
| Anthrax | - |
| 1 |
| - |
| - |
| - |
| 1 |
| |
| Total | 23 |
| 22 |
| 14 |
| 17 |
| 10 |
| 86 |
| |
Eq. Enc. = Equine encephalitis HF = Haemorrhagic fever.
Distribution Variables.
| Types source | Argus | BioCaster | GPHIN | HealthMap | MedISys | ProMED | Total | p value | |||||||
| n | % | n | % | n | % | n | % | n | % | n | % | n | % | ||
| Media | 53 | 67% | 35 | 44% | 66 | 93% | 40 | 49% | 42 | 52% | 58 | 73% | 294 | 62% | |
| Systems | 1 | 1% | 39 | 49% | 1 | 1% | 32 | 39% | 33 | 41% | 1 | 1% | 107 | 23% | <0.001 |
| Official | 25 | 32% | 5 | 6% | 4 | 6% | 10 | 12% | 6 | 7% | 21 | 26% | 71 | 15% | |
| Total | 79 | 100% | 79 | 100% | 71 | 100% | 82 | 100% | 81 | 100% | 80 | 100% | 472 | 100% | |
Media = Press, news aggregators and blogs.
* Systems = another biosurveillance system included in the study.
Official = official sources and expert contributions.
Sub-Sah. Afr = Sub-Saharan Africa.
N. Afr.- N.East = North Africa and Near-East.
VHF = Viral Haemorrhagic Fever.
Detection, sensitivity rates and rate ratios from bivariable Poisson regressions
| Argus | BioCaster | GPHIN | HealthMap | MedISys | ProMED | p value | ||
| Crude Detection | CDET | 79 | 79 | 71 | 82 | 81 | 80 | 0.20 |
| C-DR | 92% | 92% | 83% | 95% | 94% | 93% | ||
| RR | - | 1.00 | 0.90 | 1.04 | 1.03 | 1.01 | ||
| CI | - | 0.91–1.09 | 0.80–1.00 | 0.95–1.12 | 0.94–1.11 | 0.92–1.10 | ||
| p value | - | 1.00 | 0.07 | 0.35 | 0.55 | 0.77 | ||
| Intrinsic Detection | IDET | 78 | 40 | 70 | 50 | 48 | 79 | <0.001 |
| IDR | 91% | 47% | 81% | 58% | 56% | 92% | ||
| RR | 1.11 | 0.57 | - | 0.71 | 0.69 | 1.13 | ||
| CI | 0.99–1.26 | 0.45–0.73 | - | 0.58–0.88 | 0.55–0.85 | 1.00–1.27 | ||
| p value | 0.08 | <0.001 | - | 0.001 | 0.001 | 0.05 | ||
| Crude Sensitivity | CTP | 61 | 63 | 62 | 73 | 67 | 62 | 0.13 |
| C-Se | 71% | 73% | 72% | 85% | 78% | 72% | ||
| RR | 0.84 | 0.86 | 0.85 | - | 0.92 | 0.85 | ||
| CI | 0.71–0.98 | 0.73–1.00 | 0.72–0.99 | - | 0.79–1.05 | 0.72–0.99 | ||
| p value | 0.03 | 0.06 | 0.04 | - | 0.24 | 0.04 | ||
| Intrinsic Sensitivity | ITP | 60 | 37 | 62 | 43 | 44 | 61 | 0.001 |
| I-Se | 70% | 43% | 72% | 50% | 51% | 71% | ||
| RR | 0.98 | 0.61 | 1.02 | 0.70 | 0.72 | - | ||
| CI | 0.81–1.19 | 0.46–0.80 | 0.84–1.23 | 0.55–0.91 | 0.56–0.92 | - | ||
| p value | 0.87 | <0.001 | 0.87 | 0.006 | 0.01 | - | ||
RR = Rate Ratio; CI = 95% confidence interval.
None of the system can be considered as a reference and similar results were found using different combinations. For the table, moderated systems were alternatively chosen (alphabetic order) as reference and HealthMap was selected as the reference for CTP to improve readability.
Factors associated with crude or intrinsic detection from bivariable Poisson regressions.
| Crude detection | Intrinsic detection | ||||||||
| RR | 95% CI | p value | p value | RR | 95% CI | p value | p value | ||
|
| ProMED | - | - | - | - | - | - | ||
| Argus | 0.98 | 0.81–1.19 | 0.87 | 0.98 | 0.81–1.19 | 0.87 | |||
| BioCaster | 1.02 | 0.85–1.22 | 0.86 | 0.61 | 0.46–0.80 | 0.00 | |||
| Gphin | 1.00 | 0.83–1.20 | 1.00 | 0.131 | 1.02 | 0.84–1.23 | 0.87 | <0.001 | |
| HealthMap | 1.18 | 1.00–1.38 | 0.04 | 0.70 | 0.55–0.91 | 0.01 | |||
| MedISys | 1.08 | 0.91–1.29 | 0.38 | 0.72 | 0.56–0.92 | 0.01 | |||
|
| Automated | - | - | - | - | - | - | - | - |
| Moderated | 0.91 | 0.82–1.01 | 0.07 | - | 1.48 | 1.27–1.71 | 0.0001 | - | |
|
| Encephalitis | - | - | - | - | - | - | ||
| Dengue-like | 1.15 | 0.97–1.36 | 0.12 | 1.16 | 0.91–1.48 | 0.22 | |||
| VHF ¥ | 1.45 | 1.23–1.71 | <0.001 | <0.001 | 1·69 | 1.33–2.15 | <0.001 | <0.001 | |
| Diarrhoeal | 1.39 | 1.18–1.63 | <0.001 | 1.73 | 1.40–2.15 | <0.001 | |||
| Others | 1.30 | 1.12–1.52 | 0.001 | 1.33 | 1.07–1.66 | 0.01 | |||
|
| America | - | - | - | - | - | - | ||
| Sub-Sah. Afr | 1·16 | 1·02–1·33 | 0·03 | 1·33 | 1·09–1·63 | 0·01 | |||
| Europe | 0·90 | 0·75–1·08 | 0·24 | <0·001 | 1·02 | 0·80–1·31 | 0·85 | <0·001 | |
| Asia | 1·27 | 1·12–1·45 | <0·001 | 1·57 | 1·29–1·91 | <0·0001 | |||
| N. Afr.-N.East | 0·94 | 0·76–1·16 | 0·55 | 0·92 | 0·67–1·26 | 0·61 | |||
|
| Human | - | - | - | - | - | - | - | - |
| Animal | 0.72 | 0.59–0.86 | <0.001 | - | 0.77 | 0.61–0.97 | 0.03 | - | |
|
| Media | - | - | - | - | - | - | - | |
| Systems | 0.86 | 0.77–0.97 | 0.01 | 0.001 | - | - | - | - | |
| Official | 0.79 | 0.67–0.92 | 0.004 | - | - | - | - | ||
RR = Rate Ratio; 95% CI = 95% confidence interval.
Media = Press, news aggregators and blogs.
* Systems = another biosurveillance system included in the study.
Official = official and expert contributions.
Sub-Sah. Afr = Sub-Saharan Africa.
N. Afr.- N.East = North Africa and Near-East.
¥ VHF = Viral Haemorrhagic Fever.
Factors associated with crude or intrinsic detection from multivariable Poisson regression models.
| Crude detection | Intrinsic Detection | ||||||
| Variable | RR | 95% CI | p value | RR | 95% CI | p value | |
|
| Automated | - | - | - | - | - | - |
| Moderated | 0.96 | 0.88–1.04 | 0.27 | 1.53 | 1.34–1.75 | <0.001 | |
|
| English | - | - | - | - | - | - |
| Spanish | 1.10 | 0.96–1.27 | 0.18 | 1.22 | 0.99–1.51 | 0.06 | |
| French | 0.99 | 0.86–1.14 | 0.93 | 1.06 | 0.85–1.33 | 0.58 | |
| Other | 1.08 | 0.98–1.20 | 0.13 | 1.21 | 1.01–1.44 | 0.04 | |
|
| America | - | - | - | - | - | - |
| Sub-Sah. Afr | 1.10 | 0.95–1.28 | 0.20 | 1.25 | 0.98–1.60 | 0.07 | |
| Europe | 0.95 | 0.79–1.13 | 0.54 | 1.18 | 0.91–1.52 | 0.22 | |
| Asia | 1.09 | 0.97–1.24 | 0.15 | 1.30 | 1.07–1.59 | 0.01 | |
| N. Afr.-N.East | 1.16 | 0.98–1.37 | 0.08 | 1.15 | 0.86–1.53 | 0.35 | |
|
| Encephalitis | - | - | - | - | - | - |
| Dengue-like | 0.95 | 0.80–1.12 | 0.53 | 1.11 | 0.84–1.47 | 0.46 | |
| VHF | 1.06 | 0.86–1.31 | 0.60 | 1.39 | 0.99–1.94 | 0.06 | |
| Diarrheal | 1.09 | 0.91–1.30 | 0.34 | 1.55 | 1.16–2.06 | 0.003 | |
| Other | 1.01 | 0.85–1.21 | 0.90 | 1.14 | 0.87–1.49 | 0.33 | |
|
| Human | - | - | - | - | - | - |
| Animal | 0.84 | 0.68–1·02 | 0.08 | 1.08 | 0.84–1.37 | 0.55 | |
RR = Rate Ratio; 95% CI = 95% confidence interval.
Sub-Sah. Afr = Sub-Saharan Africa.
N. Afr.- N.East = North Africa and Near-East.
VHF = Viral Haemorrhagic Fever.