Literature DB >> 24598925

Crystallization and preliminary X-ray analysis of the catalytic domains of Paenibacillus sp. strain FPU-7 cell-surface-expressed chitinase ChiW.

Takafumi Itoh1, Takao Hibi1, Ikumi Sugimoto1, Fumiko Suzuki1, Yutaka Fujii2, Akira Taketo3, Hisashi Kimoto1.   

Abstract

The polysaccharide chitin is effectively hydrolyzed and utilized as a carbon and nitrogen source by the Gram-positive bacterium Paenibacillus sp. strain FPU-7. ChiW is a unique cell-surface-expressed chitinase among the Paenibacillus sp. strain FPU-7-secreted chitinases. An N-terminally truncated ChiW protein, primarily comprised of the two catalytic domains of the full-length protein, was successfully overexpressed in Escherichia coli, purified as a functional recombinant protein with a molecular mass of approximately 98 kDa and crystallized. Preliminary X-ray analysis showed that the crystal diffracted to 1.93 Å resolution and belonged to the orthorhombic space group P212121, with unit-cell parameters a = 112.1, b = 128.2, c = 162.6 Å, suggesting the presence of two molecules in an asymmetric unit.

Entities:  

Keywords:  ChiW; Paenibacillus sp. strain FPU-7; cell-surface-expressed chitinase

Mesh:

Substances:

Year:  2014        PMID: 24598925      PMCID: PMC3944700          DOI: 10.1107/S2053230X14002325

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  12 in total

1.  Bacterial SLH domain proteins are non-covalently anchored to the cell surface via a conserved mechanism involving wall polysaccharide pyruvylation.

Authors:  S Mesnage; T Fontaine; T Mignot; M Delepierre; M Mock; A Fouet
Journal:  EMBO J       Date:  2000-09-01       Impact factor: 11.598

2.  Estimation of the number of alpha-helical and beta-strand segments in proteins using circular dichroism spectroscopy.

Authors:  N Sreerama; S Y Venyaminov; R W Woody
Journal:  Protein Sci       Date:  1999-02       Impact factor: 6.725

3.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  A unique chitinase with dual active sites and triple substrate binding sites from the hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1.

Authors:  T Tanaka; S Fujiwara; S Nishikori; T Fukui; M Takagi; T Imanaka
Journal:  Appl Environ Microbiol       Date:  1999-12       Impact factor: 4.792

5.  Cooperative degradation of chitin by extracellular and cell surface-expressed chitinases from Paenibacillus sp. strain FPU-7.

Authors:  Takafumi Itoh; Takao Hibi; Yutaka Fujii; Ikumi Sugimoto; Akihiro Fujiwara; Fumiko Suzuki; Yukimoto Iwasaki; Jin-Kyung Kim; Akira Taketo; Hisashi Kimoto
Journal:  Appl Environ Microbiol       Date:  2013-09-27       Impact factor: 4.792

6.  Expression of a chitinase gene and lysis of the host cell wall during Chlorella virus CVK2 infection.

Authors:  S Hiramatsu; M Ishihara; M Fujie; S Usami; T Yamada
Journal:  Virology       Date:  1999-08-01       Impact factor: 3.616

7.  Chitinase B of "Microbulbifer degradans" 2-40 contains two catalytic domains with different chitinolytic activities.

Authors:  Michael B Howard; Nathan A Ekborg; Larry E Taylor; Ronald M Weiner; Steven W Hutcheson
Journal:  J Bacteriol       Date:  2004-03       Impact factor: 3.490

Review 8.  Protein secretion and surface display in Gram-positive bacteria.

Authors:  Olaf Schneewind; Dominique M Missiakas
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-04-19       Impact factor: 6.237

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  3 in total

1.  Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery.

Authors:  Takafumi Itoh; Takao Hibi; Fumiko Suzuki; Ikumi Sugimoto; Akihiro Fujiwara; Koji Inaka; Hiroaki Tanaka; Kazunori Ohta; Yutaka Fujii; Akira Taketo; Hisashi Kimoto
Journal:  PLoS One       Date:  2016-12-01       Impact factor: 3.240

2.  Structural and biochemical characterisation of a novel alginate lyase from Paenibacillus sp. str. FPU-7.

Authors:  Takafumi Itoh; Emi Nakagawa; Moe Yoda; Akari Nakaichi; Takao Hibi; Hisashi Kimoto
Journal:  Sci Rep       Date:  2019-10-16       Impact factor: 4.379

3.  Biochemical purification and characterization of a truncated acidic, thermostable chitinase from marine fungus for N-acetylglucosamine production.

Authors:  Bin He; Liyan Yang; Dengfeng Yang; Minguo Jiang; Chengjin Ling; Hailan Chen; Feng Ji; Lixia Pan
Journal:  Front Bioeng Biotechnol       Date:  2022-10-04
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.