Literature DB >> 24580711

DNA flexibility on short length scales probed by atomic force microscopy.

Alexey K Mazur1, Mounir Maaloum2.   

Abstract

Unusually high bending flexibility has been recently reported for DNA on short length scales. We use atomic force microscopy (AFM) in solution to obtain a direct estimate of DNA bending statistics for scales down to one helical turn. It appears that DNA behaves as a Gaussian chain and is well described by the wormlike chain model at length scales beyond 3 helical turns (10.5 nm). Below this threshold, the AFM data exhibit growing noise because of experimental limitations. This noise may hide small deviations from the Gaussian behavior, but they can hardly be significant.

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Year:  2014        PMID: 24580711     DOI: 10.1103/PhysRevLett.112.068104

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Atomic force microscopy study of DNA flexibility on short length scales: smooth bending versus kinking.

Authors:  Alexey K Mazur; Mounir Maaloum
Journal:  Nucleic Acids Res       Date:  2014-11-20       Impact factor: 16.971

2.  Probing the elastic limit of DNA bending.

Authors:  Tung T Le; Harold D Kim
Journal:  Nucleic Acids Res       Date:  2014-08-13       Impact factor: 16.971

3.  The Effects of Flexibility on dsDNA-dsDNA Interactions.

Authors:  Chuanying Chen; B Montgomery Pettitt
Journal:  Life (Basel)       Date:  2022-05-07

4.  Superstatistical model of bacterial DNA architecture.

Authors:  Mikhail I Bogachev; Oleg A Markelov; Airat R Kayumov; Armin Bunde
Journal:  Sci Rep       Date:  2017-02-22       Impact factor: 4.379

5.  Strongly Bent Double-Stranded DNA: Reconciling Theory and Experiment.

Authors:  Aleksander V Drozdetski; Abhishek Mukhopadhyay; Alexey V Onufriev
Journal:  Front Phys       Date:  2019-11-29

6.  Revisiting the Anomalous Bending Elasticity of Sharply Bent DNA.

Authors:  Peiwen Cong; Liang Dai; Hu Chen; Johan R C van der Maarel; Patrick S Doyle; Jie Yan
Journal:  Biophys J       Date:  2015-12-01       Impact factor: 4.033

7.  Evidence of protein-free homology recognition in magnetic bead force-extension experiments.

Authors:  D J O' Lee; C Danilowicz; C Rochester; A A Kornyshev; M Prentiss
Journal:  Proc Math Phys Eng Sci       Date:  2016-07       Impact factor: 2.704

8.  Simulation Assisted Analysis of the Intrinsic Stiffness for Short DNA Molecules Imaged with Scanning Atomic Force Microscopy.

Authors:  Haowei Wang; Joshua N Milstein
Journal:  PLoS One       Date:  2015-11-04       Impact factor: 3.240

9.  Evaluating the role of coherent delocalized phonon-like modes in DNA cyclization.

Authors:  Ludmil B Alexandrov; Kim Ø Rasmussen; Alan R Bishop; Boian S Alexandrov
Journal:  Sci Rep       Date:  2017-08-29       Impact factor: 4.379

  9 in total

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