| Literature DB >> 24578633 |
Elena Mettifogo1, Luis F N Nuñez1, Jorge L Chacón1, Silvana H Santander Parra1, Claudete S Astolfi-Ferreira1, José A Jerez2, Richard C Jones3, Antonio J Piantino Ferreira1.
Abstract
Several viruses have been identified in recent years in the intestinal contents of chickens and turkeys with enteric problems, which have been observed in commercial farms worldwide, including Brazil. Molecular detection of these viruses in Brazil can transform to a big threat for poultry production due to risk for intestinal integrity. This disease is characterized by severely delayed growth, low uniformity, lethargy, watery diarrhea, delayed feed consumption, and a decreased conversion rate. Chicken astrovirus (CAstV), rotavirus, reovirus, chicken parvovirus (ChPV), fowl adenovirus of subgroup I (FAdV-1), and avian nephritis virus (ANV) were investigated using the conventional polymerase chain reaction (PCR) and the reverse transcription polymerase chain reaction (RT-PCR). In addition, the infectious bronchitis virus (IBV), which may play a role in enteric disease, was included. The viruses most frequently detected, either alone or in concomitance with other viruses, were IBV, ANV, rotavirus, and CAstV followed by parvovirus, reovirus, and adenovirus. This study demonstrates the diversity of viruses in Brazilian chicken flocks presenting enteric problems characterized by diarrhea, growth retard, loss weight, and mortality, which reflects the multicausal etiology of this disease.Entities:
Mesh:
Substances:
Year: 2014 PMID: 24578633 PMCID: PMC3919086 DOI: 10.1155/2014/450423
Source DB: PubMed Journal: ScientificWorldJournal ISSN: 1537-744X
Primers sets, nucleotide sequences, amplicons, and the corresponding references that were used to screen for the viruses.
| Virus | Primer | Nucleotide sequence (5′-3′) | Amplicon (bp) | Reference |
|---|---|---|---|---|
| Parvovirus | PVF 1 | GGCCGTTAACGATATCACTCAAGTTTC | 561 |
[ |
| PVR 1 | AAAGCGCTTGCGGTGAAGTCTGGCGCT | |||
| Avian adenovirus group I | Hexon A | CAA RTT CAG RCA GAC GT | 897 |
[ |
| Hexon B | TAG TGA TGM CGS GAC ATC AT | |||
| IBV | UTR 41+ | ATGTCTATCGCCAGGGAAATGTC | 179 |
[ |
| UTR 31 | GGGCGTCCAAGTGCTGTACCC | |||
| UTR 11 | GCTCTAACTCTATACTAGCCTA | |||
| CAstV | CASpolIF | GAYACARBCGAATGCGRBAGRBTTG | 362 |
[ |
| CASpolIR | TCAGTGGAAGTGGGKCARBTCTAC | |||
| Reovirus | S4-F13 | GTGCGTGTTGGAGTTTCCCG | 1120 |
[ |
| S4-R1133 | TACGCCATCCTAGCTGGA | |||
| Rotavirus | F30 | GTGCGGAAAGATGGAGAAC | 630 |
[ |
| R660 | GTTGGGGTACCAGGGATTAA | |||
| ANV | Pol 1F | GYATGGGCGCYATCYATTTGAYAAC | 473 |
[ |
| Pol 1R | CRBTTTGCCCKCRBTARBTCTTTRBT |
AY: pyrimidine;BR: purine;CK: G ou T.
Distribution of the seven viruses in the 280 samples of intestinal contents from the chickens with and without clinical signs of enteric diseases from 2007 to 2010.
| Virus | With clinical signs % | Without clinical signs % | Total (%) |
|---|---|---|---|
| IBV | 39 (13.9) | 6 (2.1) | 45 (16.1) |
| ANV | 18 (6.4) | 4 (1.4) | 22 (7.9) |
| CAstV | 10 (3.6) | 4 (1.4) | 14 (5.0) |
| Parvovirus | 5 (1.8) | 0 (0.0) | 5 (1.8) |
| Adenovirus | 12 (4.3) | 2 (0.7) | 14 (5.0) |
| Rotavirus | 6 (2.1) | 4 (1.4) | 10 (3.6) |
| Reovirus | 1 (0.4) | 0 (0.0) | 1 (0.4) |
|
| |||
| Total one virus | 91 (32.5) | 20 (7.1) | 111 (39.6) |
|
| |||
| Concomitance† | |||
|
| |||
| Two viruses | 60 (21.4) | 14 (5.0) | 74 (26.4) |
| Three viruses | 25 (8.9) | 6 (2.1) | 31 (11.1) |
| Four viruses | 7 (2.5) | 2 (0.7) | 9 (3.2) |
| Five viruses | 0 (0.0) | 1 (0.4) | 1 (0.4) |
|
| |||
| Total concomitance viruses | 92 (32.9) | 23 (8.2) | 115 (41.1) |
|
| |||
| Total of positives | 183 (65.4%) | 43 (15.4%) | 226 (80.7) |
| Negative | 29 (10.4) | 25 (8.9) | 54 (19.3) |
|
| |||
| Total | 212 (75.7) | 68 (24.3) | 280 (100) |
IBV: infectious bronchitis virus; ANV: avian nephritis virus; CAstV: chicken astrovirus; †two or more viruses detected simultaneously in the same sample.
Positive samples for one or more viruses obtained from broiler chickens, breeders, and layer hens and the respective age in weeks at chicks which were detected.
| Broiler chickens | Broiler breeders | Pullet/layer hens | |||
|---|---|---|---|---|---|
| Weeks | Number of positive samples | Weeks | Number of positive samples | Weeks | Number of positive samples |
| 1 | 27 | 1 | 3 | 4 | 1 |
| 2 | 32 | 8 | 1 | 8 | 1 |
| 3 | 31 | 12 | 1 | 13 | 2 |
| 4 | 33 | 23 | 1 | 23 | 1 |
| 5 | 20 | 31 | 1 | 24 | 1 |
| 6 | 33 | 32 | 2 | 31 | 1 |
| 7 | 17 | 33 | 2 | 48 | 1 |
| 34 | 1 | 93 | 2 | ||
| 35 | 1 | 106 | 1 | ||
| 37 | 3 | ||||
| 40 | 2 | ||||
| 45 | 1 | ||||
| 51 | 1 | ||||
| 57 | 1 | ||||
| 58 | 1 | ||||
|
| |||||
| Total | 193 (85.4%) | Total | 22 (9.7%) | Total | 11 (4.9%) |
% of samples positive for each type of bird (n = 226).
Frequencies of individual and multiple enteric virus infections detected in intestinal samples.
| Number of combinations viruses detected | IBV | ANV | CAstV | Rotavirus | ChPV | FAdV-1 | Reovirus |
|---|---|---|---|---|---|---|---|
| One virus | 45 | 22 | 14 | 10 | 5 | 14 | 1 |
| Two viruses | 49 | 28 | 16 | 31 | 13 | 7 | 4 |
| Three viruses | 17 | 25 | 22 | 4 | 10 | 4 | 11 |
| Four viruses | 8 | 7 | 6 | 3 | 5 | 2 | 5 |
| Five viruses | 1 | 1 | 1 | 0 | 1 | 0 | 1 |
|
| |||||||
| Number of positive samples | 120 | 83 | 59 | 48 | 34 | 27 | 22 |
|
| |||||||
| % of positive samples for each virus ( | 42.9 | 29.6 | 21.1 | 17.1 | 12.1 | 9.6 | 7.9 |
ANV: avian nephritis virus; CAstV: chicken astrovirus; ChPV: chicken parvovirus; IBV: infectious bronchitis virus; FAdV-1: fowl adenovirus group 1.