| Literature DB >> 24578614 |
Lu Zheng1, Guanghua Luo1, Jun Zhang1, Qinfeng Mu1, Yuanping Shi1, Maria Berggren-Söderlund2, Peter Nilsson-Ehle2, Xiaoying Zhang1, Ning Xu2.
Abstract
The present study investigated the correlation among genetic polymorphisms of the proximal promoter region of apolipoprotein M (apoM) gene, the polymorphisms in relation to apoM expressions and the susceptibility to coronary artery diseases (CAD) in a Han Chinese population. Four common polymorphic sites, i.e., T-1628G, C-1065A, T-855C and T-778C, were confirmed, and a new deletion mutation C-724del was found, in 206 CAD patients and 209 non-CAD patients using direct DNA sequencing analyses. Occurrences of alleles T-1628G, T-855C and C-724del were significantly higher in CAD patients compared to non-CAD patients. Moreover we examined all these polymorphisms in relation to apoM expression by applying luciferase reporter assay. It demonstrated that constructs -855C and 724del showed obvious decreased luciferase activities, i.e., (0.93±0.15 vs. 2.11±0.15; P=0.012) and (1.13±0.25 vs. 2.11±0.15; P=0.009) respectively, which indicates these two polymorphisms could confer decreased apoM expressions. Meanwhile the occurrences of these two SNP were also significantly higher in the CAD patients than in non-CAD patients. It is therefore reasonable to speculate that down-regulated apoM expressions in relation to these polymorphisms may affect HDL and cholesterol metabolism in vivo and further influence the susceptibility to CAD, although the underlying mechanisms need further investigation.Entities:
Keywords: apolipoprotein M; coronary artery diseases; expression; polymorphism; promoter
Mesh:
Substances:
Year: 2014 PMID: 24578614 PMCID: PMC3936031 DOI: 10.7150/ijms.7696
Source DB: PubMed Journal: Int J Med Sci ISSN: 1449-1907 Impact factor: 3.738
Available apoM SNPs in proximal promoter region (http://www.ncbi.nlm.nih.gov/SNP)
| SNP | Allele | Region | |
|---|---|---|---|
| 1 | rs79177639 | G-1904A | Promoter |
| 2 | rs12525463 | G-1886A | Promoter |
| 3 | rs6921907 | C-1692T | Promoter |
| 4 | rs12525471 | C-1687A | Promoter |
| 5 | rs34260741 | A-1647- | Promoter |
| 6 | rs1266078 | G-1628T | Promoter |
| 7 | rs58368425 | C-1590G | Promoter |
| 8 | rs9267528 | C-1530T | Promoter |
| 9 | rs114106481 | G-1529A | Promoter |
| 10 | rs115826764 | G-1323A | Promoter |
| 11 | rs55880811 | T-1140C | Promoter |
| 12 | rs114288601 | C-1134A | Promoter |
| 13 | rs805297 | C-1065A | Promoter |
| 14 | rs77322555 | A-1041C | Promoter |
| 15 | rs4947251 | A-1009G | Promoter |
| 16 | rs9404941 | T-885C | Promoter |
| 17 | rs805296 | T-778C | Promoter |
| 18 | rs74485832 | G-723- | Promoter |
| 19 | rs62395806 | G-599A | Promoter |
| 20 | rs76611345 | C-597A | Promoter |
| 21 | rs115239580 | G-358T | Promoter |
| 22 | rs73398248 | C-319A | Promoter |
| 23 | rs114269338 | G-255A | Promoter |
Primers for the site-directed mutagenesis of apoM promoter
| SNP | 5'-3' | |
|---|---|---|
| C-1065A | Sense | TTATAGCAAATATATACTTTGGA |
| Anti-sense | AGCAAAGACTTGCACATGGTAA | |
| T-855C | Sense | CTCGACATCCCAGGC |
| Anti-sense | AGGGAGGATTGCTTG | |
| T-778C | Sense | ACCACATCGGCTAATTTTTGTA |
| Anti-sense | CAAAACTCTGTCTCTACAAAAA | |
| C-724- | Sense | GTTTTGAACTCCTGGGTCAAGCCATCCGCCCA |
| Anti-sense | TGGGCGGATGGCTTGACCCAGGAGTTCAAAAC |
The mutant sites were marked in bold and underlined.
Clinical characteristics of CAD and non-CAD patients
| CAD patients | Non-CAD patients | ||
|---|---|---|---|
| Male/Female | 165/41 | 157/52 | 0.965 |
| Age ( | 61.86 ± 9.20 | 60.39 ± 9.06 | 0.125 |
| TG ( | 2.43±2.10** | 1.76±1.01 | |
| TC ( | 5.11±1.06* | 4.77±1.22 | |
| LDL-C ( | 2.54±1.01 | 2.70±0.74 | 0.070 |
| HDL-C ( | 1.11±0.23** | 1.29±0.32 | |
| BMI | 23.71±1.70 | 23.45±1.39 | 0.220 |
| FBG ( | 6.64±2.54* | 6.05±1.19 |
Notes: Data are means ± SD. *P<0.05, **P<0.01 vs. control group. P-Value <0.05 was shown in bold.
Abbreviations: CAD, coronary artery disease; TG, triglycerides; TC, total cholesterol; LDL-C, low-density lipoprotein cholesterol; HDL-C, high-density lipoprotein cholesterol; BMI, Body Mass Index; FBG, fasting blood glucose.
Allele frequencies and genotype distributions of apoM proximal promoter region in CAD and non-CAD patients
| SNP ID | Allele | Allele Frequency | Allele | Genotype | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CAD | Non-CAD | OR | Non-CAD | CAD | Common odds ratio | ||||||||||||
| 11 | 12 | 22 | 11 | 12 | 22 | Non-CAD | CAD | ||||||||||
| T-1628G | T | 80.8 | 87.3 | 1.634 | 159 | 47 | 3 | 137 | 59 | 10 | 0.822 | 0.275 | 1.711 | ||||
| rs1266078 | G | 19.2 | 12.7 | 1.119-2.385 | (76.1) | (22.5) | (1.4) | (66.5) | (28.6) | (4.9) | |||||||
| C-1065A | C | 66.0 | 69.9 | 1.193 | 0.236 | 100 | 92 | 17 | 87 | 98 | 21 | 0.513 | 0.386 | 1.199 | 0.224 | ||
| rs805297 | A | 34.0 | 30.1 | 0.891-1.597 | (47.9) | (44.0) | (8.1) | (42.2) | (47.6) | (10.2) | |||||||
| T-855C | T | 77.2 | 84.5 | 1.605 | 148 | 57 | 4 | 125 | 68 | 3 | 0.579 | 0.568 | 1.711 | ||||
| rs9404941 | C | 22.8 | 15.6 | 1.131-2.279 | (70.8) | (27.3) | (1.9) | (60.7) | (33.0) | (6.3) | |||||||
| T-778C | T | 89.6 | 89.7 | 1.016 | 0.944 | 170 | 35 | 4 | 165 | 39 | 2 | 0.180 | 0.856 | 0.974 | 0.945 | ||
| (rs805296 | C | 10.4 | 10.3 | 0.650-1.588 | (81.3) | (16.8) | (1.9) | (80.1) | (18.9) | (1.0) | |||||||
| C-724del | C | 92.0 | 95.9 | 2.054 | 193 | 15 | 1 | 176 | 27 | 3 | 0.246 | 0.112 | 1.904 | ||||
| del | 8.0 | 4.1 | 1.125-3.749 | (92.3) | (7.2) | (0.5) | (85.4) | (13.1) | (1.5) | ||||||||
P-Value <0.05 was shown in bold.
Fig 1A new deletion mutation in site -724 in apoM promoter gene. ApoM promoter gene was amplified by the polymerase chain reaction (PCR) from subjects. The sequence data shows a single cytidine deletion at nucleotide -724 (-C724del) resulting three genotypes. Figure 1B was a compound heterozygote for this mutation. In heterozygote the deletion mutation causes the appearance of a series of double peaks starting from the -724 position (in-box). Figure 1A and 1C were the sequence data of homozygotes for -724C and -724del, respectively. The red arrow presented the -724 mutation site.
C-724del. Genotype and clinical characteristics of CAD patients and non-diabetic controls
| CAD patients | Non-CAD patients | |||||||
|---|---|---|---|---|---|---|---|---|
| CC | C/- + -/- | CC | C/- + -/- | CC | CC | |||
| Age (years) | 60.2±9.0 | 62.2±9.4 | 62.0±9.2 | 61.2±9.4 | 0.410 | 0.655 | ||
| TGmmol/L | 1.80±1.03 | 1.32±0.40 | 2.25±1.58 | 3.48±3.84 | 0.072 | |||
| TCmmol/L | 4.65±1.14 | 6.26±1.12 | 4.95±1.00 | 6.04±0.90 | ||||
| HDLmmol/L | 1.30±0.32 | 1.22±0.24 | 1.13±0.22 | 1.03±0.28 | 0.361 | |||
| LDLmmol/L | 2.70±0.75 | 2.66±0.49 | 2.54±1.02 | 2.53±0.97 | 0.812 | 0.949 | ||
| FBGmmol/L | 6.04±1.20 | 6.12±1.24 | 6.60±2.42 | 6.84±2.63 | 0.810 | 0.626 | ||
| BMI | 23.43±1.40 | 23.67±1.34 | 23.75±1.69 | 23.47±1.71 | 0.523 | 0.406 | ||
T-855C. Genotype and clinical characteristics of CAD patients and non-diabetic controls
| CAD patients | Non-CAD patients | |||||||
|---|---|---|---|---|---|---|---|---|
| TT | TC+CC | TT | TC+CC | TT | TT | |||
| Age (years) | 59.6±9.0 | 62.3±9.0 | 61.9±9.3 | 61.8±9.1 | 0.045 | 0.902 | ||
| TGmmol/L | 1.70±0.79 | 1.90±1.40 | 2.29±1.61 | 2.64±2.68 | 0.205 | 0.252 | ||
| TCmmol/L | 4.55±1.04 | 5.33±1.42 | 4.82±0.96 | 5.55±1.06 | ||||
| HDLmmol/L | 1.30±0.32 | 1.27±0.30 | 1.11±0.23 | 1.13±0.24 | 0.459 | 0.386 | ||
| LDLmmol/L | 2.72±0.76 | 2.65±0.69 | 2.54±0.97 | 2.53±1.08 | 0.572 | 0.956 | ||
| FBGmmol/L | 6.02±1.12 | 6.13±1.36 | 6.75±2.32 | 6.46±2.64 | 0.542 | 0.409 | ||
| BMI | 23.41±1.37 | 23.53±1.46 | 23.70±1.67 | 23.73±1.75 | 0.583 | 0.912 | ||
T-1628G. Genotype and clinical characteristics of CAD patients and non-diabetic controls
| CAD patients | Non-CAD patients | |||||||
|---|---|---|---|---|---|---|---|---|
| TT | TG+GG | TT | TG+GG | TT | TT | |||
| Age (years) | 60.5±9.0 | 59.9±9.3 | 61.4±9.4 | 62.8±8.7 | 0.664 | 0.295 | ||
| TGmmol/L | 1.81±1.08 | 1.59±0.71 | 2.52±2.32 | 2.24±1.55 | 0.162 | 0.355 | ||
| TCmmol/L | 4.82±1.19 | 4.62±1.31 | 5.16±1.07 | 5.01±1.04 | 0.307 | 0.337 | ||
| HDLmmol/L | 1.31±0.32 | 1.26±0.30 | 1.10±0.24 | 1.15±0.23 | 0.365 | 0.154 | ||
| LDLmmol/L | 2.69±0.76 | 2.73±0.66 | 2.52±1.03 | 2.57±0.98 | 0.685 | 0.770 | ||
| FBGmmol/L | 6.04±1.14 | 6.07±1.37 | 6.80±2.71 | 6.32±1.80 | 0.895 | 0.182 | ||
| BMI | 23.50±1.38 | 23.28±1.44 | 23.77±1.75 | 23.59±1.59 | 0.329 | 0.468 | ||
Notes: Data are means ± SD. P-Value <0.05 was shown in bold.
Association of apoM promoter haplotypes with CAD
| Haplotype* | Haplotype frequency | OR | ||||
|---|---|---|---|---|---|---|
| -1628-855-724 | Cases | Controls | (95%CI) | |||
| H1 | G C C | 0.037 | 0.016 | 2.421 (0.954~6.142) | 0.055 | |
| H2 | G T C | 0.148 | 0.097 | 1.638 (1.072~2.503) | ||
| H3 | T C C | 0.146 | 0.122 | 1.242 (0.831~1.856) | 0.290 | |
| H4 | T C D | 0.044 | 0.011 | 4.376 (1.529~12.527) | ||
| H5 | T T C | 0.589 | 0.725 | 0.531 (0.392~0.717) | ||
^ P-Value <0.05 is shown in bold.
* Haplotype are arranged in the order T-1628G, T-855C and C-724del. Haplotype with frequency less than 3% was pooled and not analyzed.
Fig 2Relative luciferase activities regulated by mutations in the proximal promoter region of apoM. 293HEK were transfected with different pGL3-pAPOM constructs and luciferase activities were measured by using the Luciferase Assay System as described in the material and methods. Significantly lower luciferase activities were generated by the constructs of pGL3-855C and pGL3-724del compared to the wide-type (WT). Results are represented as mean ± SD (n = 3 for each group). *P<0.05 vs. WT.