| Literature DB >> 24574078 |
Keren Yeshuroon-Koffler1, Yonat Shemer-Avni, Ayelet Keren-Naus, Aviv D Goldbart.
Abstract
BACKGROUND: Early life viral infection is associated with neurogenic inflammation that is present in lymphoid tissues of the upper airway in children with obstructive sleep apnea (OSA). We hypothesized that viral genomic material is present in tonsils of children with OSA. Therefore, we examined tonsils for the presence of respiratory viruses' nucleic acids in children with OSA, and in children without OSA (undergoing surgery for recurrent throat infections (RI)).Entities:
Keywords: OSA; RSV; inflammation; virus
Mesh:
Substances:
Year: 2014 PMID: 24574078 PMCID: PMC7168000 DOI: 10.1002/ppul.23005
Source DB: PubMed Journal: Pediatr Pulmonol ISSN: 1099-0496
Primers and Probes used in Panel 1 RTPCR Assay1
| Viral set | Primers and probe sequence | Concentration (nM) | Target gene | Reference or source |
|---|---|---|---|---|
| Influenza B | AAATACGGTGGATTAAATAAAAGCAA | 600 | HA | 15 |
| CCAGCAATAGCTCCGAAGAAA | ||||
| VIC‐CACCCATATTGGGCAATTTCCTATGGC‐TANRA | 600 | |||
| 200 | ||||
| Influenza A | GACCRATCCTGTCACCTCTGAC | 300 | NS | Retrieved from 16 |
| AGGGCATTYTGGACAAAKCTGCTA | 300 | |||
| FAM‐TGCAGTCCTCGCTCACTGGGCACG‐BHQ |
| |||
| hMPV | CATATAAGCATGCTATATTAAAAG | 200 | Nucleocapsid protein | 17 |
| CCTATTTCTGCAGCATATTTGTATCAG | 250 | |||
| MGB‐TGYAATGATGAGGGTGTCACTGCGGTTG‐NED |
| |||
| RSV | GCCAAAAAATTGTTTCCACAATA | 250 | L | 14 |
| TCTTCATCACCATACTTTTCTGTTA | ||||
| ROX‐TCAGTAGTAGACCATGTGAATTCCCTGCA‐BBQ | 500 | |||
| 176 | ||||
| Human endogenous retrovirus ERV3 (IC) | CATGGGAAGCAAGGGAACTAATG | 232 | Human ERV3 | 14 |
| CCCAGCGAGCAATACAGAATTT | 232 | |||
| Cy5‐TCTTCCCTCGAACCTGCACCATCAAT‐BBQ |
|
Symbols and abbreviations: HA, hemagglutinine; NS, nonstructural protein; L, L protein; FAM, 6‐carboxyfluorescein; BHQ, black hole quencher; MGB, minor groove binder; ROX, carboxy‐X‐rhodamine; BBQ, blackberry quencher; IC, internal control.
Boldface values indicate hydrolysis probes.
Primers and Probes Used in Panel 2 RTPCR Assay1
| Viral set | Primers and probe sequence | Concentration (nM) | Target gene | Reference or source |
|---|---|---|---|---|
| Adenovirus set I | ATGACTTTTGAGGTGGATCCCATGGA | 100 | H | 14 |
| GCCGAGAAGGGCGTGCGCAGGTA | 100 | |||
| Cyan500‐AGCCCACCCTKCC+T+T+TA+T‐BBQ |
| |||
| Adenovirus set II | GCCCCAGTGGTCTTACATGCACATC | 100 | H | 14 |
| GCCACGGTGGGGTTTCTAAACTT | 100 | |||
| Cyan500‐TCGGAGTACCTGAGCCCGGGTCTGGTGCA‐BBQ |
| |||
| Parainfluenza type 3 virus | AAGATCTACAAGTTGGCAYAGCAA | 500 | HN | 14 |
| AATGTCCCCATGGACATTCAT | 500 | |||
| ROX‐TTCCTGGTCTTGATAGCACATTATGCCA‐BBQ |
| |||
| Rhinovirus | TGGACAGGGTGTGAAGAGC | 500 | 5' UTR | 14 |
| CAAAGTAGTCGGTCCCATCC | 500 | |||
| FAM‐TCCTCCGGCCCCTGAATG‐BHQ1 |
| |||
| Coronavirus NL63 | ACGTACTTCTATTATGAAGCATGATATTAA | 125 | POL | 14 |
| AGCAGATCTAATGTTATACTTAAAACTACG | 125 | |||
| YAK‐ATTGCCAAGGCTCCTAAACGTACAGGTGTT‐BHQ1 |
| |||
| Human endogenous retrovirus ERV3 (IC) | CATGGGAAGCAAGGGAACTAATG | 100 | Human ERV3 | 14 |
| CCCAGCGAGCAATACAGAATTT | 100 | |||
| Cy5‐TCTTCCCTCGAACCTGCACCATCAAT‐BBQ |
|
Symbols and abbreviations: +,Locked nucleic acid; IC, internal control; FAM, 6‐carboxyfluorescein; YAK, Yakima; ROX, carboxy‐X‐rhodamine; BBQ, blackberry quencher; BHQ1, black hole quencher 1; H, hexon protein; HN, hemagglutinin‐neuroaminidase. POL, RNA polymerase.
Boldface values indicate hydrolysis probes.
Demographic, Medical History, and Polysomnographic Key Findings
| OSA (n = 34) | RI (n = 22) |
| |
|---|---|---|---|
| Age (y) | |||
| Mean ± SD | 4.22 ± 1.14 | 4.35 ± 1.36 | NS |
| Sex (M:F) | 15:19 | 9:13 | NS |
| BMI (Z score) | |||
| Mean ± SD | 0.61 ± 1.08 | 0.57 ± 1.23 | NS |
| Tonsils size | |||
| Mean ± SD | 3.21 ± 1.01 | 3.11 ± 1.12 | NS |
| Medical history | |||
| History of LRTI | 34/34 | 20/22 | NS |
| History of recurrent wheezing or asthma | 7/34 | 3/22 | NS (0.42) |
| Polysomnography | |||
| AHI (events/hour) | 12.1 ± 4.08 | 0.61 ± 0.22 | <0.001 |
| Oxygen min. Sat | 84.2 ± 5.36 | 94.2 ± 2.14 | <0.001 |
| Arousal index (arousal/hr) | 19.6 ± 10.3 | 18.3 ± 8.5 | NS |
| Sleep efficiency (%) | 85.3 ± 7.5 | 87.6 ± 6.3 | NS |
LRTI, lower respiratory tract infection; Sat, oxygen saturation.
Figure 1Prevalence of viral genomes in OSA versus RI. Virus detection occurred only in OSA samples (50.0%), and in none of the RI samples. (P < 0.001).
Figure 2Single, dual and quadruple (4) infections in tonsils of OSA patients. Most of the patients (76.2%) had one virus detected.
Figure 3Types of virus detection by mqRTPCT in tonsills of patients with OSA. Only Influenza and parainfluenza viruses were not detected.
Virus Detection Frequencies (Study Group vs. Controls)
| Virus | OSA n (%) | RIn |
|
|---|---|---|---|
| Influenza B virus | 0 | 0 | NS |
| Influenza A virus | 0 | 0 | NS |
| hMPV | 6 (25.0) | 0 | 0.041 |
| RSV | 2 (8.3) | 0 | 0.14 |
| Adenovirus | 7 (29.2) | 0 | 0.024 |
| Parainfluenza virus type 3 | 0 | 0 | NS |
| Corona (NL‐63) | 1 (4.2) | 0 | 0.42 |
| Rhinovirus | 8 (33.3) | 0 | 0.013 |