Literature DB >> 24567544

jHeatmap: an interactive heatmap viewer for the web.

Jordi Deu-Pons1, Michael P Schroeder1, Nuria Lopez-Bigas2.   

Abstract

SUMMARY: The generation of large volumes of omics data to conduct exploratory studies has become feasible and is now extensively used to gain new insights in life sciences. The effective exploration of the generated data by experts is a crucial step for the successful extraction of knowledge from these datasets. This requires availability of intuitive and interactive visualization tools that can display complex data. Matrix heatmaps are graphical representations frequently used for the description of complex omics data. Here, we present jHeatmap, a web-based tool that allows interactive matrix heatmap visualization and exploration. It is an adaptable javascript library designed to be embedded by means of basic coding skills into web portals to visualize data matrices as interactive and customizable heatmaps. AVAILABILITY: jHeatmap is freely available at the GitHub code repository at https://github.com/jheatmap/jheatmap. Working examples and the documentation may be found at http://jheatmap.github.io/jheatmap.
© The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Mesh:

Year:  2014        PMID: 24567544     DOI: 10.1093/bioinformatics/btu094

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  13 in total

1.  Effects of Common Data Errors in Electronic Health Records on Emergency Department Operational Performance Metrics: A Monte Carlo Simulation.

Authors:  Michael J Ward; Wesley H Self; Craig M Froehle
Journal:  Acad Emerg Med       Date:  2015-08-20       Impact factor: 3.451

2.  An Interactive Cluster Heat Map to Visualize and Explore Multidimensional Metabolomic Data.

Authors:  Paul H Benton; Julijana Ivanisevic; Gary Siuzdak; Duane Rinehart; Adrian Epstein; Michael E Kurczy; Michael D Boska; Howard E Gendelman
Journal:  Metabolomics       Date:  2014-12-12       Impact factor: 4.290

3.  Saliva metabolomic profile of COVID-19 patients associates with disease severity.

Authors:  Mohammad H Semreen; Rabih Halwani; Narjes Saheb Sharif-Askari; Nelson Cruz Soares; Hajer A Mohamed; Fatemeh Saheb Sharif-Askari; Hawra Ali Hussain Alsayed; Hamza Al-Hroub; Laila Salameh; Rufaida Satti Osman; Bassam Mahboub; Qutayba Hamid
Journal:  Metabolomics       Date:  2022-10-22       Impact factor: 4.747

4.  RepExplore: addressing technical replicate variance in proteomics and metabolomics data analysis.

Authors:  Enrico Glaab; Reinhard Schneider
Journal:  Bioinformatics       Date:  2015-02-25       Impact factor: 6.937

5.  InCHlib - interactive cluster heatmap for web applications.

Authors:  Ctibor Skuta; Petr Bartůněk; Daniel Svozil
Journal:  J Cheminform       Date:  2014-09-17       Impact factor: 5.514

6.  HemI: a toolkit for illustrating heatmaps.

Authors:  Wankun Deng; Yongbo Wang; Zexian Liu; Han Cheng; Yu Xue
Journal:  PLoS One       Date:  2014-11-05       Impact factor: 3.240

7.  Meta-Prediction of MTHFR Gene Polymorphism Mutations and Associated Risk for Colorectal Cancer.

Authors:  S P K Shiao; C H Yu
Journal:  Biol Res Nurs       Date:  2016-02-08       Impact factor: 2.522

8.  shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics.

Authors:  Bohdan B Khomtchouk; James R Hennessy; Claes Wahlestedt
Journal:  PLoS One       Date:  2017-05-11       Impact factor: 3.240

9.  Functional Diversity of Transcriptional Regulators in the Cyanobacterium Synechocystis sp. PCC 6803.

Authors:  Mengliang Shi; Xiaoqing Zhang; Guangsheng Pei; Lei Chen; Weiwen Zhang
Journal:  Front Microbiol       Date:  2017-02-21       Impact factor: 5.640

10.  jvenn: an interactive Venn diagram viewer.

Authors:  Philippe Bardou; Jérôme Mariette; Frédéric Escudié; Christophe Djemiel; Christophe Klopp
Journal:  BMC Bioinformatics       Date:  2014-08-29       Impact factor: 3.169

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