Literature DB >> 24567220

Multicolor labeling in developmental gene regulatory network analysis.

Aditya J Sethi1, Robert C Angerer, Lynne M Angerer.   

Abstract

The sea urchin embryo is an important model system for developmental gene regulatory network (GRN) analysis. This chapter describes the use of multicolor fluorescent in situ hybridization (FISH) as well as a combination of FISH and immunohistochemistry in sea urchin embryonic GRN studies. The methods presented here can be applied to a variety of experimental settings where accurate spatial resolution of multiple gene products is required for constructing a developmental GRN.

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Year:  2014        PMID： 24567220      PMCID： PMC4609530          DOI： 10.1007/978-1-62703-974-1_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  22 in total

Review 1.  A genomic regulatory network for development.

Authors:  Eric H Davidson; Jonathan P Rast; Paola Oliveri; Andrew Ransick; Cristina Calestani; Chiou-Hwa Yuh; Takuya Minokawa; Gabriele Amore; Veronica Hinman; Cesar Arenas-Mena; Ochan Otim; C Titus Brown; Carolina B Livi; Pei Yun Lee; Roger Revilla; Alistair G Rust; Zheng jun Pan; Maria J Schilstra; Peter J C Clarke; Maria I Arnone; Lee Rowen; R Andrew Cameron; David R McClay; Leroy Hood; Hamid Bolouri
Journal:  Science       Date:  2002-03-01       Impact factor: 47.728

2.  One-, two-, and three-color whole-mount in situ hybridization to Drosophila embryos.

Authors:  G Hauptmann
Journal:  Methods       Date:  2001-04       Impact factor: 3.608

3.  Information processing at the foxa node of the sea urchin endomesoderm specification network.

Authors:  Smadar Ben-Tabou de-Leon; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

Review 4.  Properties of developmental gene regulatory networks.

Authors:  Eric H Davidson; Michael S Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-22       Impact factor: 11.205

5.  The Caenorhabditis elegans vulva: a post-embryonic gene regulatory network controlling organogenesis.

Authors:  Ted O Ririe; Jolene S Fernandes; Paul W Sternberg
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-22       Impact factor: 11.205

6.  The sea urchin animal pole domain is a Six3-dependent neurogenic patterning center.

Authors:  Zheng Wei; Junko Yaguchi; Shunsuke Yaguchi; Robert C Angerer; Lynne M Angerer
Journal:  Development       Date:  2009-04       Impact factor: 6.868

7.  High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development.

Authors:  Stefan C Materna; Jongmin Nam; Eric H Davidson
Journal:  Gene Expr Patterns       Date:  2010-04-14       Impact factor: 1.224

8.  Activation of the skeletogenic gene regulatory network in the early sea urchin embryo.

Authors:  Tara Sharma; Charles A Ettensohn
Journal:  Development       Date:  2010-02-24       Impact factor: 6.868

9.  The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage.

Authors:  Isabelle S Peter; Eric H Davidson
Journal:  Dev Biol       Date:  2009-11-03       Impact factor: 3.582

10.  The role of micromere signaling in Notch activation and mesoderm specification during sea urchin embryogenesis.

Authors:  H C Sweet; P G Hodor; C A Ettensohn
Journal:  Development       Date:  1999-12       Impact factor: 6.868
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  7 in total

1.  microRNA-31 modulates skeletal patterning in the sea urchin embryo.

Authors:  Nadezda A Stepicheva; Jia L Song
Journal:  Development       Date:  2015-09-23       Impact factor: 6.868

2.  Neurogenic gene regulatory pathways in the sea urchin embryo.

Authors:  Zheng Wei; Lynne M Angerer; Robert C Angerer
Journal:  Development       Date:  2015-12-10       Impact factor: 6.868

3.  An anterior signaling center patterns and sizes the anterior neuroectoderm of the sea urchin embryo.

Authors:  Ryan C Range; Zheng Wei
Journal:  Development       Date:  2016-03-07       Impact factor: 6.868

4.  The Power of Simplicity: Sea Urchin Embryos as in Vivo Developmental Models for Studying Complex Cell-to-cell Signaling Network Interactions.

Authors:  Ryan C Range; Marina Martinez-Bartolomé; Stephanie D Burr
Journal:  J Vis Exp       Date:  2017-02-16       Impact factor: 1.355

5.  Rab35 regulates skeletogenesis and gastrulation by facilitating actin remodeling and vesicular trafficking.

Authors:  Carolyn Remsburg; Michael Testa; Jia L Song
Journal:  Cells Dev       Date:  2021-02-08

6.  Characterization and expression analysis of Galnts in developing Strongylocentrotus purpuratus embryos.

Authors:  Amber L Famiglietti; Zheng Wei; Thomas M Beres; Adina L Milac; Duy T Tran; Divya Patel; Robert C Angerer; Lynne M Angerer; Lawrence A Tabak
Journal:  PLoS One       Date:  2017-04-27       Impact factor: 3.240

7.  Integration of canonical and noncanonical Wnt signaling pathways patterns the neuroectoderm along the anterior-posterior axis of sea urchin embryos.

Authors:  Ryan C Range; Robert C Angerer; Lynne M Angerer
Journal:  PLoS Biol       Date:  2013-01-15       Impact factor: 8.029
  7 in total

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