Literature DB >> 24562861

A B3LYP and MP2(full) theoretical investigation on the cooperativity effect between hydrogen-bonding and cation-molecule interactions and thermodynamic property in the 1: 2 (Na⁺: N-(Hydroxymethyl)acetamide) ternary complex.

Guo-rui Feng1, Ting-ye Qi, Wen-jing Shi, Yu-xia Guo, Yu-jiang Zhang, Jun Guo, Li-xun Kang.   

Abstract

The cooperativity effects between the O/N-H∙∙∙O hydrogen-bonding and Na⁺∙∙∙O cation-molecule interactions in the 1: 2 (Na⁺: N-(Hydroxymethyl)acetamide) systems were investigated at the B3LYP/6-311++G**, MP2(full)/6-311++G** and MP2(full)/aug-cc-pvtz levels. The thermodynamic cooperativity calculations were also carried out for two pathways of the ternary-complex formation. The result shows that, in most ternary complexes, the O/N-H∙∙∙O and Na⁺∙∙∙O interactions are weakened in comparison with those in binary systems, leading to the anti-cooperativity effects, in particular in the complexes in which only the Na⁺∙∙∙O interactions exist. Shifts of electron density confirm the existence of anti-cooperativity. The increase of favorable enthalpic contribution leads to the positive cooperativity effect with negative ΔG(coop.) on forming the ternary complex by initial N-(Hydroxymethyl)acetamide dimer followed by addition of Na⁺. In forming the ternary complex by Na⁺∙∙∙N-(Hydroxymethyl)acetamide with the second N-(Hydroxymethyl)acetamide unit, the large unfavorable entropy change leads to the negative cooperativity effect with positive ΔG(coop.). The ternary complex is more easily formed by the pathway in which Na⁺ binds to N-(Hydroxymethyl)acetamide dimer.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24562861     DOI: 10.1007/s00894-014-2154-3

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  28 in total

1.  Multivalency and cooperativity in supramolecular chemistry.

Authors:  Jovica D Badjić; Alshakim Nelson; Stuart J Cantrill; W Bruce Turnbull; J Fraser Stoddart
Journal:  Acc Chem Res       Date:  2005-09       Impact factor: 22.384

2.  Nucleobase-fluorobenzene interactions: hydrogen bonding wins over pi stacking.

Authors:  Roman Leist; Jann A Frey; Philipp Ottiger; Hans-Martin Frey; Samuel Leutwyler; Rafał A Bachorz; Wim Klopper
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

3.  Interplay between anion-pi and hydrogen bonding interactions.

Authors:  Daniel Escudero; Antonio Frontera; David Quiñonero; Pere M Deyà
Journal:  J Comput Chem       Date:  2009-01-15       Impact factor: 3.376

4.  Interaction of methotrexate, folates, and pyridine nucleotides with dihydrofolate reductase: calorimetric and spectroscopic binding studies.

Authors:  S Subramanian; B T Kaufman
Journal:  Proc Natl Acad Sci U S A       Date:  1978-07       Impact factor: 11.205

5.  Water mediated ligand functional group cooperativity: the contribution of a methyl group to binding affinity is enhanced by a COO(-) group through changes in the structure and thermodynamics of the hydration waters of ligand-thermolysin complexes.

Authors:  Nader N Nasief; Hongwei Tan; Jing Kong; David Hangauer
Journal:  J Med Chem       Date:  2012-09-19       Impact factor: 7.446

6.  Anion-pi interactions in bisadenine derivatives: a combined crystallographic and theoretical study.

Authors:  Angel Garcia-Raso; Francisca M Albertí; Juan J Fiol; Andres Tasada; Miquel Barceló-Oliver; Elies Molins; Daniel Escudero; Antonio Frontera; David Quiñonero; Pere M Deyà
Journal:  Inorg Chem       Date:  2007-11-14       Impact factor: 5.165

7.  A B3LYP and MP2 theoretical investigation into host-guest interaction between calix[4]arene and Li(+) or Na (+).

Authors:  Duan-lin Cao; Fu-de Ren; Ya-qing Feng; Sheng-nan Liu; Shu-sen Chen
Journal:  J Mol Model       Date:  2009-08-25       Impact factor: 1.810

8.  Thermodynamic study of dihydrofolate reductase inhibitor selectivity.

Authors:  S P Sasso; R M Gilli; J C Sari; O S Rimet; C M Briand
Journal:  Biochim Biophys Acta       Date:  1994-07-20

9.  Binding of coenzyme analogues to Lactobacillus casei dihydrofolate reductase: binary and ternary complexes.

Authors:  B Birdsall; A S Burgen; G C Roberts
Journal:  Biochemistry       Date:  1980-08-05       Impact factor: 3.162

10.  Influence of the pi-pi interaction on the hydrogen bonding capacity of stacked DNA/RNA bases.

Authors:  Pierre Mignon; Stefan Loverix; Jan Steyaert; Paul Geerlings
Journal:  Nucleic Acids Res       Date:  2005-03-23       Impact factor: 16.971

View more
  4 in total

1.  Theoretical investigations into the intermolecular hydrogen-bonding interactions of N-(hydroxymethyl)acetamide dimers.

Authors:  Hai-Fei Tang; Hua Zhong; Ling-Ling Zhang; Ming-Xing Gong; Shu-Qin Song; Qing-Ping Tian
Journal:  J Mol Model       Date:  2018-05-31       Impact factor: 1.810

2.  Theoretical explanation for the pharmaceutical incompatibility through the cooperativity effect of the drug-drug intermolecular interactions in the phenobarbital∙∙∙paracetamol∙∙∙H2O complex.

Authors:  Fei-Peng Zhai; Hong-En Wei; Yi Liu; Feng-Yun Hu
Journal:  J Mol Model       Date:  2019-06-07       Impact factor: 1.810

3.  Computational insight into complex structures of thorium coordination with N, N'- bis(3-allyl salicylidene)-o-phenylenediamine.

Authors:  Wenbo Lan; Sha Gao; Ying-Wu Lin; Lifu Liao; Xiaofeng Wang; Changming Nie
Journal:  J Mol Model       Date:  2016-08-25       Impact factor: 1.810

4.  A B3LYP and MP2(full) theoretical investigation into cooperativity effects, aromaticity and thermodynamic properties in the Na(+)⋯benzonitrile⋯H2O ternary complex.

Authors:  Guang-ming Zhao; Yu-cun Liu; Wen-jing Shi; Tao Chai; Fu-de Ren
Journal:  J Mol Model       Date:  2014-07-09       Impact factor: 1.810

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.