Literature DB >> 24561874

An unexpected journey: lysine methylation across the proteome.

Kaitlyn E Moore1, Or Gozani2.   

Abstract

The dynamic modification of histone proteins by lysine methylation has emerged over the last decade as a key regulator of chromatin functions. In contrast, our understanding of the biological roles for lysine methylation of non-histone proteins has progressed more slowly. Though recently it has attracted less attention, ε-methyl-lysine in non-histone proteins was first observed over 50 years ago. In that time, it has become clear that, like the case for histones, non-histone methylation represents a key and common signaling process within the cell. Recent work suggests that non-histone methylation occurs on hundreds of proteins found in both the nucleus and the cytoplasm, and with important biomedical implications. Technological advances that allow us to identify lysine methylation on a proteomic scale are opening new avenues in the non-histone methylation field, which is poised for dramatic growth. Here, we review historical and recent findings in non-histone lysine methylation signaling, highlight new methods that are expanding opportunities in the field, and discuss outstanding questions and future challenges about the role of this fundamental post-translational modification (PTM).
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Lysine methylation; Methylation signaling; Non-histone methylation; Post-translational modification; Proteome-wide

Mesh:

Substances:

Year:  2014        PMID: 24561874      PMCID: PMC4139483          DOI: 10.1016/j.bbagrm.2014.02.008

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  134 in total

1.  Genome-wide location and function of DNA binding proteins.

Authors:  B Ren; F Robert; J J Wyrick; O Aparicio; E G Jennings; I Simon; J Zeitlinger; J Schreiber; N Hannett; E Kanin; T L Volkert; C J Wilson; S P Bell; R A Young
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  Binding of the MLL PHD3 finger to histone H3K4me3 is required for MLL-dependent gene transcription.

Authors:  Pei-Yun Chang; Robert A Hom; Catherine A Musselman; Li Zhu; Alex Kuo; Or Gozani; Tatiana G Kutateladze; Michael L Cleary
Journal:  J Mol Biol       Date:  2010-05-07       Impact factor: 5.469

3.  The MBT repeats of L3MBTL1 link SET8-mediated p53 methylation at lysine 382 to target gene repression.

Authors:  Lisandra E West; Siddhartha Roy; Karin Lachmi-Weiner; Ryo Hayashi; Xiaobing Shi; Ettore Appella; Tatiana G Kutateladze; Or Gozani
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

4.  Epsilon-N-methyl lysine in myosin.

Authors:  G Huszar; M Elzinga
Journal:  Nature       Date:  1969-08-23       Impact factor: 49.962

5.  Protein methylation.

Authors:  W K Paik; S Kim
Journal:  Science       Date:  1971-10-08       Impact factor: 47.728

6.  Post-translational processing of rat ribosomal proteins. Ubiquitous methylation of Lys22 within the zinc-finger motif of RL40 (carboxy-terminal extension protein 52) and tissue-specific methylation of Lys4 in RL29.

Authors:  N A Williamson; J Raliegh; N A Morrice; R E Wettenhall
Journal:  Eur J Biochem       Date:  1997-06-15

7.  Two novel methyltransferases acting upon eukaryotic elongation factor 1A in Saccharomyces cerevisiae.

Authors:  Rebecca S Lipson; Kristofor J Webb; Steven G Clarke
Journal:  Arch Biochem Biophys       Date:  2010-05-26       Impact factor: 4.013

8.  Histone H1 variant-specific lysine methylation by G9a/KMT1C and Glp1/KMT1D.

Authors:  Thomas Weiss; Sonja Hergeth; Ulrike Zeissler; Annalisa Izzo; Philipp Tropberger; Barry M Zee; Miroslav Dundr; Benjamin A Garcia; Sylvain Daujat; Robert Schneider
Journal:  Epigenetics Chromatin       Date:  2010-03-24       Impact factor: 4.954

Review 9.  SET7/9 mediated methylation of non-histone proteins in mammalian cells.

Authors:  Sriharsa Pradhan; Hang Gyeong Chin; Pierre-Olivier Estève; Steven E Jacobsen
Journal:  Epigenetics       Date:  2009-08-06       Impact factor: 4.528

10.  Histone recognition by human malignant brain tumor domains.

Authors:  Nataliya Nady; Liubov Krichevsky; Nan Zhong; Shili Duan; Wolfram Tempel; Maria F Amaya; Mani Ravichandran; Cheryl H Arrowsmith
Journal:  J Mol Biol       Date:  2012-09-04       Impact factor: 5.469

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  38 in total

1.  Lysine methylation by the mitochondrial methyltransferase FAM173B optimizes the function of mitochondrial ATP synthase.

Authors:  Jędrzej M Małecki; Hanneke L D M Willemen; Rita Pinto; Angela Y Y Ho; Anders Moen; Ingrid F Kjønstad; Boudewijn M T Burgering; Fried Zwartkruis; Niels Eijkelkamp; Pål Ø Falnes
Journal:  J Biol Chem       Date:  2018-12-10       Impact factor: 5.157

Review 2.  Non-histone protein methylation as a regulator of cellular signalling and function.

Authors:  Kyle K Biggar; Shawn S-C Li
Journal:  Nat Rev Mol Cell Biol       Date:  2014-12-10       Impact factor: 94.444

3.  The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomes.

Authors:  Erna Davydova; Tadahiro Shimazu; Maren Kirstin Schuhmacher; Magnus E Jakobsson; Hanneke L D M Willemen; Tongri Liu; Anders Moen; Angela Y Y Ho; Jędrzej Małecki; Lisa Schroer; Rita Pinto; Takehiro Suzuki; Ida A Grønsberg; Yoshihiro Sohtome; Mai Akakabe; Sara Weirich; Masaki Kikuchi; Jesper V Olsen; Naoshi Dohmae; Takashi Umehara; Mikiko Sodeoka; Valentina Siino; Michael A McDonough; Niels Eijkelkamp; Christopher J Schofield; Albert Jeltsch; Yoichi Shinkai; Pål Ø Falnes
Journal:  Nat Commun       Date:  2021-02-09       Impact factor: 14.919

4.  METTL21B Is a Novel Human Lysine Methyltransferase of Translation Elongation Factor 1A: Discovery by CRISPR/Cas9 Knockout.

Authors:  Joshua J Hamey; Beeke Wienert; Kate G R Quinlan; Marc R Wilkins
Journal:  Mol Cell Proteomics       Date:  2017-06-29       Impact factor: 5.911

5.  The METTL20 Homologue from Agrobacterium tumefaciens Is a Dual Specificity Protein-lysine Methyltransferase That Targets Ribosomal Protein L7/L12 and the β Subunit of Electron Transfer Flavoprotein (ETFβ).

Authors:  Jędrzej Małecki; Helge-André Dahl; Anders Moen; Erna Davydova; Pål Ø Falnes
Journal:  J Biol Chem       Date:  2016-02-29       Impact factor: 5.157

6.  aKMT Catalyzes Extensive Protein Lysine Methylation in the Hyperthermophilic Archaeon Sulfolobus islandicus but is Dispensable for the Growth of the Organism.

Authors:  Yindi Chu; Yanping Zhu; Yuling Chen; Wei Li; Zhenfeng Zhang; Di Liu; Tongkun Wang; Juncai Ma; Haiteng Deng; Zhi-Jie Liu; Songying Ouyang; Li Huang
Journal:  Mol Cell Proteomics       Date:  2016-06-21       Impact factor: 5.911

7.  From histones to ribosomes: a chromatin regulator tangoes with translation.

Authors:  Scott B Rothbart; Bradley M Dickson; Brian D Strahl
Journal:  Cancer Discov       Date:  2015-03       Impact factor: 39.397

8.  Assessing histidine tags for recruiting deoxyribozymes to catalyze peptide and protein modification reactions.

Authors:  Chih-Chi Chu; Scott K Silverman
Journal:  Org Biomol Chem       Date:  2016-05-18       Impact factor: 3.876

Review 9.  Histone H4 Lysine 20 (H4K20) Methylation, Expanding the Signaling Potential of the Proteome One Methyl Moiety at a Time.

Authors:  Rick van Nuland; Or Gozani
Journal:  Mol Cell Proteomics       Date:  2015-11-23       Impact factor: 5.911

Review 10.  Emerging roles of lysine methylation on non-histone proteins.

Authors:  Xi Zhang; Yaling Huang; Xiaobing Shi
Journal:  Cell Mol Life Sci       Date:  2015-07-31       Impact factor: 9.261

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