Literature DB >> 24560989

Solution NMR conformation of glycosaminoglycans.

Vitor H Pomin1.   

Abstract

Nuclear magnetic resonance (NMR) spectroscopy has been giving a pivotal contribution to the progress of glycomics, mostly by elucidating the structural, dynamical, conformational and intermolecular binding aspects of carbohydrates. Particularly in the field of conformation, NOE resonances, scalar couplings, residual dipolar couplings, and chemical shift anisotropy offsets have been the principal NMR parameters utilized. Molecular dynamics calculations restrained by NMR-data input are usually employed in conjunction to generate glycosidic bond dihedral angles. Glycosaminoglycans (GAGs) are a special class of sulfated polysaccharides extensively studied worldwide. Besides regulating innumerous physiological processes, these glycans are also widely explored in the global market as either clinical or nutraceutical agents. The conformational aspects of GAGs are key regulators to the quality of interactions with the functional proteins involved in biological events. This report discusses the solution conformation of each GAG type analyzed by one or more of the above-mentioned methods.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Chemical shift anisotropy; Glycosaminoglycans; Nuclear Overhauser effect; Residual dipolar coupling; Scalar coupling

Mesh:

Substances:

Year:  2014        PMID: 24560989     DOI: 10.1016/j.pbiomolbio.2014.01.001

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN: 0079-6107            Impact factor:   3.667


  5 in total

1.  Sulfation and cation effects on the conformational properties of the glycan backbone of chondroitin sulfate disaccharides.

Authors:  Christina E Faller; Olgun Guvench
Journal:  J Phys Chem B       Date:  2015-05-07       Impact factor: 2.991

2.  Impact of sulfation pattern on the conformation and dynamics of sulfated fucan oligosaccharides as revealed by NMR and MD.

Authors:  Ismael N L Queiroz; Xiaocong Wang; John N Glushka; Gustavo R C Santos; Ana P Valente; James H Prestegard; Robert J Woods; Paulo A S Mourão; Vitor H Pomin
Journal:  Glycobiology       Date:  2014-12-19       Impact factor: 4.313

3.  Nuclear Magnetic Resonance Methods in Structural Characterization of Glycosaminoglycans.

Authors:  Vitor H Pomin; Barbara Mulloy
Journal:  Methods Mol Biol       Date:  2022

4.  Characterization and Quantification of Highly Sulfated Glycosaminoglycan Isomers by Gated-Trapped Ion Mobility Spectrometry Negative Electron Transfer Dissociation MS/MS.

Authors:  Juan Wei; Jiandong Wu; Yang Tang; Mark E Ridgeway; Melvin A Park; Catherine E Costello; Joseph Zaia; Cheng Lin
Journal:  Anal Chem       Date:  2019-01-31       Impact factor: 6.986

5.  Solution Conformation of Heparin Tetrasaccharide. DFT Analysis of Structure and Spin⁻Spin Coupling Constants.

Authors:  Miloš Hricovíni; Michal Hricovíni
Journal:  Molecules       Date:  2018-11-21       Impact factor: 4.411

  5 in total

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